Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30136
         (710 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276485-1|CAB81951.1|  283|Homo sapiens integral membrane trans...    38   0.047
AL357374-7|CAI13605.1|  336|Homo sapiens RNA binding motif prote...    31   4.1  
AY003717-1|AAF85717.1|  103|Homo sapiens immunoglobulin alpha he...    31   5.4  
AY003715-1|AAF85715.1|  104|Homo sapiens immunoglobulin alpha he...    31   5.4  
BC119786-1|AAI19787.1| 1088|Homo sapiens apolipoprotein B48 rece...    30   9.4  
AF141334-1|AAF78765.1| 1076|Homo sapiens placenta apolipoprotein...    30   9.4  
AF141333-1|AAF76256.1| 1088|Homo sapiens apolipoprotein B48 rece...    30   9.4  
AF141332-1|AAF76255.1| 1088|Homo sapiens apolipoprotein B48 rece...    30   9.4  

>AJ276485-1|CAB81951.1|  283|Homo sapiens integral membrane
           transporter protein protein.
          Length = 283

 Score = 37.5 bits (83), Expect = 0.047
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +3

Query: 255 WRTVAILTCKSIVGTGYRG 311
           WR+VA+LTCKS+V  GYRG
Sbjct: 16  WRSVAVLTCKSVVRPGYRG 34


>AL357374-7|CAI13605.1|  336|Homo sapiens RNA binding motif protein
           39 protein.
          Length = 336

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = -3

Query: 330 MVRLVFRPYTQFRRSICTSESLRSSTGFPLTST*PGIVHHLSGPSICAQSAPSFTD 163
           M+R +F P+ +F  S C  ++L    GF L    P  V H++     A SA SF D
Sbjct: 137 MLRGIFEPFGRFSDSECAKKALEQLNGFELAGR-PMKVGHVT-ERTDASSASSFLD 190


>AY003717-1|AAF85717.1|  103|Homo sapiens immunoglobulin alpha heavy
           chain variable region protein.
          Length = 103

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 705 GCFGSEVLGTLLSGFRLPWPPSCCHERPTP 616
           GC  +    +L +G R PW PS  H RP P
Sbjct: 71  GCSSTSCAVSLNTGAREPWSPSPQHPRPAP 100


>AY003715-1|AAF85715.1|  104|Homo sapiens immunoglobulin alpha heavy
           chain variable region protein.
          Length = 104

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 705 GCFGSEVLGTLLSGFRLPWPPSCCHERPTP 616
           GC  +    +L +G R PW PS  H RP P
Sbjct: 71  GCSSTSCAVSLNTGAREPWSPSPQHPRPAP 100


>BC119786-1|AAI19787.1| 1088|Homo sapiens apolipoprotein B48
           receptor protein.
          Length = 1088

 Score = 29.9 bits (64), Expect = 9.4
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +2

Query: 137 RTPEASRFQSVNEGAL*AQMLGPERW*TMPGQVEVRGNPVEDRSDSDVQIDR 292
           RT EA+  Q+    A+  Q  G     +  GQV++RG   E R D  ++ DR
Sbjct: 426 RTEEAAESQTAGREAVGGQEAGE----SFEGQVDLRGKEAEMRQDLGIRADR 473


>AF141334-1|AAF78765.1| 1076|Homo sapiens placenta apolipoprotein
           B48 receptor type 2 protein.
          Length = 1076

 Score = 29.9 bits (64), Expect = 9.4
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +2

Query: 137 RTPEASRFQSVNEGAL*AQMLGPERW*TMPGQVEVRGNPVEDRSDSDVQIDR 292
           RT EA+  Q+    A+  Q  G     +  GQV++RG   E R D  ++ DR
Sbjct: 426 RTEEAAESQTAGREAVGGQEAGE----SFEGQVDLRGKEAEMRQDLGIRADR 473


>AF141333-1|AAF76256.1| 1088|Homo sapiens apolipoprotein B48
           receptor protein.
          Length = 1088

 Score = 29.9 bits (64), Expect = 9.4
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +2

Query: 137 RTPEASRFQSVNEGAL*AQMLGPERW*TMPGQVEVRGNPVEDRSDSDVQIDR 292
           RT EA+  Q+    A+  Q  G     +  GQV++RG   E R D  ++ DR
Sbjct: 426 RTEEAAESQTAGREAVGGQEAGE----SFEGQVDLRGKEAEMRQDLGIRADR 473


>AF141332-1|AAF76255.1| 1088|Homo sapiens apolipoprotein B48
           receptor protein.
          Length = 1088

 Score = 29.9 bits (64), Expect = 9.4
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +2

Query: 137 RTPEASRFQSVNEGAL*AQMLGPERW*TMPGQVEVRGNPVEDRSDSDVQIDR 292
           RT EA+  Q+    A+  Q  G     +  GQV++RG   E R D  ++ DR
Sbjct: 426 RTEEAAESQTAGREAVGGQEAGE----SFEGQVDLRGKEAEMRQDLGIRADR 473


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,334,014
Number of Sequences: 237096
Number of extensions: 2386375
Number of successful extensions: 7896
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7896
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)