Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30089
         (748 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR542186-1|CAG46983.1|  108|Homo sapiens TBCA protein.                 92   2e-18
CR542170-1|CAG46967.1|  108|Homo sapiens TBCA protein.                 92   2e-18
BT007354-1|AAP36018.1|  108|Homo sapiens tubulin-specific chaper...    92   2e-18
BC105285-1|AAI05286.1|  108|Homo sapiens tubulin folding cofacto...    92   2e-18
BC018210-1|AAH18210.1|  108|Homo sapiens tubulin folding cofacto...    92   2e-18

>CR542186-1|CAG46983.1|  108|Homo sapiens TBCA protein.
          Length = 108

 Score = 91.9 bits (218), Expect = 2e-18
 Identities = 43/86 (50%), Positives = 59/86 (68%)
 Frame = +1

Query: 7   MADPRIRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQES 186
           MADPR+RQIKIKTGVVKR+             Q+ +I++++ E  + ++I+KQ E+LQES
Sbjct: 1   MADPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQES 60

Query: 187 LMMVPDCQRRLIKAYTDLKTTLEQNR 264
            MM+PDCQRRL  AY DL+  LE  +
Sbjct: 61  RMMIPDCQRRLEAAYLDLQRILENEK 86


>CR542170-1|CAG46967.1|  108|Homo sapiens TBCA protein.
          Length = 108

 Score = 91.9 bits (218), Expect = 2e-18
 Identities = 43/86 (50%), Positives = 59/86 (68%)
 Frame = +1

Query: 7   MADPRIRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQES 186
           MADPR+RQIKIKTGVVKR+             Q+ +I++++ E  + ++I+KQ E+LQES
Sbjct: 1   MADPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQES 60

Query: 187 LMMVPDCQRRLIKAYTDLKTTLEQNR 264
            MM+PDCQRRL  AY DL+  LE  +
Sbjct: 61  RMMIPDCQRRLEAAYLDLQRILENEK 86


>BT007354-1|AAP36018.1|  108|Homo sapiens tubulin-specific chaperone
           a protein.
          Length = 108

 Score = 91.9 bits (218), Expect = 2e-18
 Identities = 43/86 (50%), Positives = 59/86 (68%)
 Frame = +1

Query: 7   MADPRIRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQES 186
           MADPR+RQIKIKTGVVKR+             Q+ +I++++ E  + ++I+KQ E+LQES
Sbjct: 1   MADPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQES 60

Query: 187 LMMVPDCQRRLIKAYTDLKTTLEQNR 264
            MM+PDCQRRL  AY DL+  LE  +
Sbjct: 61  RMMIPDCQRRLEAAYLDLQRILENEK 86


>BC105285-1|AAI05286.1|  108|Homo sapiens tubulin folding cofactor A
           protein.
          Length = 108

 Score = 91.9 bits (218), Expect = 2e-18
 Identities = 43/86 (50%), Positives = 59/86 (68%)
 Frame = +1

Query: 7   MADPRIRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQES 186
           MADPR+RQIKIKTGVVKR+             Q+ +I++++ E  + ++I+KQ E+LQES
Sbjct: 1   MADPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQES 60

Query: 187 LMMVPDCQRRLIKAYTDLKTTLEQNR 264
            MM+PDCQRRL  AY DL+  LE  +
Sbjct: 61  RMMIPDCQRRLEAAYLDLQRILENEK 86


>BC018210-1|AAH18210.1|  108|Homo sapiens tubulin folding cofactor A
           protein.
          Length = 108

 Score = 91.9 bits (218), Expect = 2e-18
 Identities = 43/86 (50%), Positives = 59/86 (68%)
 Frame = +1

Query: 7   MADPRIRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQES 186
           MADPR+RQIKIKTGVVKR+             Q+ +I++++ E  + ++I+KQ E+LQES
Sbjct: 1   MADPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQES 60

Query: 187 LMMVPDCQRRLIKAYTDLKTTLEQNR 264
            MM+PDCQRRL  AY DL+  LE  +
Sbjct: 61  RMMIPDCQRRLEAAYLDLQRILENEK 86


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,088,437
Number of Sequences: 237096
Number of extensions: 1313683
Number of successful extensions: 3303
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3300
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8959138240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)