Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30075
         (789 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X74614-1|CAA52685.1|  250|Homo sapiens outer dense fiber protein...    33   1.2  
BC104457-1|AAI04458.1|  250|Homo sapiens outer dense fiber of sp...    33   1.2  
BC104456-1|AAI04457.1|  250|Homo sapiens outer dense fiber of sp...    33   1.2  
AK125767-1|BAC86280.1|  168|Homo sapiens protein ( Homo sapiens ...    32   2.7  

>X74614-1|CAA52685.1|  250|Homo sapiens outer dense fiber protein
           protein.
          Length = 250

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -1

Query: 195 CKIHLLCHDWCCNSFHRYYNEYHYCMMNSLRHHH-GLHCFHNCLDCYCLYKNLCIR 31
           C   L  H +CC   H     Y YC+  S R    GL   + C  C C YK  C+R
Sbjct: 35  CLCDLYMHPYCCCDLH----PYPYCLCYSKRSRSCGLCDLYPC--CLCDYKLYCLR 84


>BC104457-1|AAI04458.1|  250|Homo sapiens outer dense fiber of sperm
           tails 1 protein.
          Length = 250

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -1

Query: 195 CKIHLLCHDWCCNSFHRYYNEYHYCMMNSLRHHH-GLHCFHNCLDCYCLYKNLCIR 31
           C   L  H +CC   H     Y YC+  S R    GL   + C  C C YK  C+R
Sbjct: 35  CLCDLYMHPYCCCDLH----PYPYCLCYSKRSRSCGLCDLYPC--CLCDYKLYCLR 84


>BC104456-1|AAI04457.1|  250|Homo sapiens outer dense fiber of sperm
           tails 1 protein.
          Length = 250

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -1

Query: 195 CKIHLLCHDWCCNSFHRYYNEYHYCMMNSLRHHH-GLHCFHNCLDCYCLYKNLCIR 31
           C   L  H +CC   H     Y YC+  S R    GL   + C  C C YK  C+R
Sbjct: 35  CLCDLYMHPYCCCDLH----PYPYCLCYSKRSRSCGLCDLYPC--CLCDYKLYCLR 84


>AK125767-1|BAC86280.1|  168|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43779 fis, clone TESTI2051488. ).
          Length = 168

 Score = 31.9 bits (69), Expect = 2.7
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
 Frame = -1

Query: 168 WC-CNSFH----RYYNEYHYCMMNSLRHHHGLHCFHN 73
           WC C+S H    R ++  H+C  +   HH G H  HN
Sbjct: 122 WCSCHSHHHSHHRSHHRSHHCSHHHSHHHSGHHSHHN 158


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,908,569
Number of Sequences: 237096
Number of extensions: 1680286
Number of successful extensions: 4478
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4467
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)