Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0111.Seq
         (772 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC070377-1|AAH70377.1|  117|Homo sapiens mediator complex subuni...    46   2e-04

>BC070377-1|AAH70377.1|  117|Homo sapiens mediator complex subunit
           11 protein.
          Length = 117

 Score = 46.0 bits (104), Expect = 2e-04
 Identities = 20/42 (47%), Positives = 31/42 (73%)
 Frame = +2

Query: 245 KLLAQVSTGQPHEGSGYASQKVLQMAWHRLEHVRSWVNELDR 370
           + L QV+TGQPHEGS Y+S+K  QMA  R+++ R  ++++ R
Sbjct: 68  RYLTQVATGQPHEGSSYSSRKDCQMALKRVDYARLKLSDVAR 109



 Score = 44.0 bits (99), Expect = 6e-04
 Identities = 21/62 (33%), Positives = 36/62 (58%)
 Frame = +3

Query: 69  ERIQVLDEIEKDIITXXXXXXXXXXELSKEKSGQKQAESNTSQFLRTLSQVESKLSEQIN 248
           ER++ L++IE++I            ELSKEK+ ++  +   + F  ++  VE++LS QI 
Sbjct: 9   ERLRALEDIEREIGAILQNAGTVILELSKEKTNERLLDRQAAAFTASVQHVEAELSAQIR 68

Query: 249 YL 254
           YL
Sbjct: 69  YL 70


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,349,458
Number of Sequences: 237096
Number of extensions: 2176767
Number of successful extensions: 3675
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3668
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)