Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0101.Seq
         (870 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ926533-1|ABK81360.1|  106|Homo sapiens immunoglobulin heavy ch...    31   4.1  
U38324-1|AAB09634.1|  129|Homo sapiens anti-c-erbB-2 immunoglobu...    31   5.4  
DQ926332-1|ABK81548.1|  130|Homo sapiens immunoglobulin heavy ch...    31   5.4  

>DQ926533-1|ABK81360.1|  106|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 106

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -3

Query: 409 TGPPLEKMGESLSTIC-*STFAWISRW--WINXLPSSRVRRAGGIY 281
           +GP ++K GESL   C  S +++ + W  W+  +P  R+   G IY
Sbjct: 7   SGPEVKKPGESLRISCKGSGYSFTTSWIGWVRQMPGKRLEWLGIIY 52


>U38324-1|AAB09634.1|  129|Homo sapiens anti-c-erbB-2 immunoglobulin
           heavy chain V protein.
          Length = 129

 Score = 31.1 bits (67), Expect = 5.4
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -3

Query: 415 LGTGPPLEKMGESLSTIC-*STFAWISRW--WINXLPSSRVRRAGGIY 281
           L +G  L+K GESL   C  S +++ S W  W+  +P   +   G IY
Sbjct: 5   LQSGAELKKPGESLKISCKGSGYSFTSYWIAWVRQMPGKALEYMGSIY 52


>DQ926332-1|ABK81548.1|  130|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 130

 Score = 31.1 bits (67), Expect = 5.4
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -3

Query: 409 TGPPLEKMGESLSTIC-*STFAWISRW--WINXLPSSRVRRAGGIY 281
           +GP ++K GESL+  C  S +++ S W  W+  LP   +   G IY
Sbjct: 7   SGPEVKKPGESLNISCTGSGYSFTSYWIGWVRQLPGKGLEWMGIIY 52


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,987,850
Number of Sequences: 237096
Number of extensions: 2291968
Number of successful extensions: 8990
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8990
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11048563978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)