Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00008
         (801 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC025959-1|AAH25959.1|  492|Homo sapiens dynein, cytoplasmic 1, ...    31   3.7  
AF035812-1|AAB88513.1|  492|Homo sapiens dynein light intermedia...    31   3.7  

>BC025959-1|AAH25959.1|  492|Homo sapiens dynein, cytoplasmic 1,
           light intermediate chain 2 protein.
          Length = 492

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 137 SPTQGGPRTGPRSRPASGPAGTPDSQ*GTAENKP 238
           SP +G P   PR++   GPA  P S  GT+  KP
Sbjct: 383 SPARG-PSGSPRTQGRGGPASVPSSSPGTSVKKP 415


>AF035812-1|AAB88513.1|  492|Homo sapiens dynein light intermediate
           chain 2 protein.
          Length = 492

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 137 SPTQGGPRTGPRSRPASGPAGTPDSQ*GTAENKP 238
           SP +G P   PR++   GPA  P S  GT+  KP
Sbjct: 383 SPARG-PSGSPRTQGRGGPASVPSSSPGTSVKKP 415


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,827,527
Number of Sequences: 237096
Number of extensions: 2449347
Number of successful extensions: 5975
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5931
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9869080686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)