Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0082
         (658 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ005262-1|AAY26911.1|  130|Homo sapiens HF1 allergic immunoglob...    32   2.1  
S56197-1|AAB25739.1|  119|Homo sapiens rheumatoid factor G9 heav...    30   6.3  
AK129620-1|BAC85198.1|  494|Homo sapiens protein ( Homo sapiens ...    30   6.3  
AF381596-1|AAK59355.1|  142|Homo sapiens immunoglobulin heavy ch...    30   6.3  
Z14197-1|CAA78566.1|  135|Homo sapiens Ig heavy chain variable  ...    30   8.3  
EF178086-1|ABM67241.1|  123|Homo sapiens immunoglobulin heavy ch...    30   8.3  
AM082306-1|CAL06452.1|  101|Homo sapiens immunoglobulin heavy ch...    30   8.3  

>DQ005262-1|AAY26911.1|  130|Homo sapiens HF1 allergic
           immunoglobulin epsilon heavy chain variable region
           protein.
          Length = 130

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 563 VTPGFSQSRRCKTTASELYTTHYRANWVPGPPSRMLELVLIILFS 429
           V P  + S +C      + T HY  +W+  PP + LE +  I +S
Sbjct: 12  VKPSETLSLKCTVPGDSVTTGHYYWSWIRQPPGKGLEWIGYIFYS 56


>S56197-1|AAB25739.1|  119|Homo sapiens rheumatoid factor G9 heavy
           chain protein.
          Length = 119

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -3

Query: 563 VTPGFSQSRRCKTTASELYTTHYRANWVPGPPSRMLELVLIILFS 429
           V P  + S  C  +   + ++ Y   W+P PP + LE +  I +S
Sbjct: 5   VKPSETLSLTCTVSGGSISSSSYYWGWIPQPPGKGLEWIGSIYYS 49


>AK129620-1|BAC85198.1|  494|Homo sapiens protein ( Homo sapiens
           cDNA FLJ26109 fis, clone SPL05286, highly similar to Ig
           alpha-1 chain C region. ).
          Length = 494

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -3

Query: 629 AGPLSLLRQLAKGECAARRLSWVTPGFSQSRRCKTTASELYTTHYRANWVPGPPSRMLEL 450
           A P S+L Q+   E        VTP  + S  C  + + L T+H+   WV  PP + LE 
Sbjct: 12  AAPRSVLSQVQLHESGP---GLVTPSGTLSLTCAVSGASLNTSHW-WTWVRQPPGKGLEW 67

Query: 449 V 447
           +
Sbjct: 68  I 68


>AF381596-1|AAK59355.1|  142|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 142

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 542 SRRCKTTASELYTTHYRANWVPGPPSRMLELVLIILFS 429
           S  C  +   + +T+Y  NW+  PP + LE +  I +S
Sbjct: 38  SLTCTVSGGSISSTNYYLNWIRQPPGKGLEWIGTIYYS 75


>Z14197-1|CAA78566.1|  135|Homo sapiens Ig heavy chain variable
           region (VDJ) protein.
          Length = 135

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = -3

Query: 635 IGAGPLSLLRQLAKGECAARRLSWVTPGFSQSRRCKTTASELYTTHYRANWVPGPPSRML 456
           +GA P  +L QL   E        V P  + S  C  +   + ++ Y   W+  PP + L
Sbjct: 5   LGAAPRWVLSQLQLQESGP---GLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGL 61

Query: 455 ELVLIILFS 429
           E +  I +S
Sbjct: 62  EWIGSIYYS 70


>EF178086-1|ABM67241.1|  123|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 123

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 563 VTPGFSQSRRCKTTASELYTTHYRANWVPGPPSRMLELVLIILFS 429
           V P  + S  C  +   + TT++   W+  PP + LE +  + +S
Sbjct: 14  VKPSETLSLTCSVSGGSVSTTNFYWGWIRQPPGKGLEWIATMFYS 58


>AM082306-1|CAL06452.1|  101|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 101

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = -3

Query: 563 VTPGFSQSRRCKTTASELYTTHYRANWVPGPPSRMLELVLIILFS 429
           V PG S S  C  TASE   ++Y  +WV   P + LE V  I+ S
Sbjct: 15  VQPGGSLSLSC--TASEFTFSNYAMSWVRQAPGKGLEWVSSIIGS 57


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,117,536
Number of Sequences: 237096
Number of extensions: 2192863
Number of successful extensions: 10932
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10932
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)