Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0079
         (456 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY332222-1|AAP93638.1|  592|Homo sapiens impedes mitogenic signa...    29   7.6  
AF035950-1|AAB88538.1|  237|Homo sapiens putative DDB p127-assoc...    29   7.6  
AF035620-1|AAC24200.1|  600|Homo sapiens BRCA1-associated protei...    29   7.6  
AB208878-1|BAD92115.1|  632|Homo sapiens BRCA1 associated protei...    29   7.6  

>AY332222-1|AAP93638.1|  592|Homo sapiens impedes mitogenic signal
           propagation protein.
          Length = 592

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 297 KYSGSRTS-LSRQQYYWNDNPLKVRNKSS*EINNIT*NFKVKINE*AKLVNK 449
           +YS   TS L  Q+ YW +  +++   ++ EINN+   FK  I +   L +K
Sbjct: 407 EYSYLLTSQLESQRIYWENKIVRIEKDTAEEINNMKTKFKETIEKCDNLEHK 458


>AF035950-1|AAB88538.1|  237|Homo sapiens putative DDB
           p127-associated protein protein.
          Length = 237

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 297 KYSGSRTS-LSRQQYYWNDNPLKVRNKSS*EINNIT*NFKVKINE*AKLVNK 449
           +YS   TS L  Q+ YW +  +++   ++ EINN+   FK  I +   L +K
Sbjct: 52  EYSYLLTSQLESQRIYWENKIVRIEKDTAEEINNMKTKFKETIEKCDNLEHK 103


>AF035620-1|AAC24200.1|  600|Homo sapiens BRCA1-associated protein 2
           protein.
          Length = 600

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 297 KYSGSRTS-LSRQQYYWNDNPLKVRNKSS*EINNIT*NFKVKINE*AKLVNK 449
           +YS   TS L  Q+ YW +  +++   ++ EINN+   FK  I +   L +K
Sbjct: 407 EYSYLLTSQLESQRIYWENKIVRIEKDTAEEINNMKTKFKETIEKCDNLEHK 458


>AB208878-1|BAD92115.1|  632|Homo sapiens BRCA1 associated protein
           variant protein.
          Length = 632

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 297 KYSGSRTS-LSRQQYYWNDNPLKVRNKSS*EINNIT*NFKVKINE*AKLVNK 449
           +YS   TS L  Q+ YW +  +++   ++ EINN+   FK  I +   L +K
Sbjct: 447 EYSYLLTSQLESQRIYWENKIVRIEKDTAEEINNMKTKFKETIEKCDNLEHK 498


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,749,803
Number of Sequences: 237096
Number of extensions: 920515
Number of successful extensions: 1035
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3815180866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)