Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0009
         (606 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC065551-1|AAH65551.1|  440|Homo sapiens WAS/WASL interacting pr...    30   7.3  
AJ431177-1|CAD24007.1|  440|Homo sapiens WIRE protein protein.         30   7.3  
AB043786-1|BAB85113.1|  440|Homo sapiens WICH protein.                 30   7.3  

>BC065551-1|AAH65551.1|  440|Homo sapiens WAS/WASL interacting
           protein family, member 2 protein.
          Length = 440

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 7   RGPPNSAAADPR*GPIEKNGIKKFAVPTPPSRI 105
           R PP+  AA P   P+ +NG +    P PP R+
Sbjct: 316 RDPPSRGAAPPPPPPVIRNGARDAPPPPPPYRM 348


>AJ431177-1|CAD24007.1|  440|Homo sapiens WIRE protein protein.
          Length = 440

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 7   RGPPNSAAADPR*GPIEKNGIKKFAVPTPPSRI 105
           R PP+  AA P   P+ +NG +    P PP R+
Sbjct: 316 RDPPSRGAAPPPPPPVIRNGARDAPPPPPPYRM 348


>AB043786-1|BAB85113.1|  440|Homo sapiens WICH protein.
          Length = 440

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 7   RGPPNSAAADPR*GPIEKNGIKKFAVPTPPSRI 105
           R PP+  AA P   P+ +NG +    P PP R+
Sbjct: 316 RDPPSRGAAPPPPPPVIRNGARDAPPPPPPYRM 348


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,117,524
Number of Sequences: 237096
Number of extensions: 2009549
Number of successful extensions: 2993
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2993
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6410414940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)