Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0253
         (663 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC128401-1|AAI28402.1|  337|Homo sapiens retinal pigment epithel...    30   8.5  
BC128121-1|AAI28122.1|  337|Homo sapiens retinal pigment epithel...    30   8.5  
BC128120-1|AAI28121.1|  337|Homo sapiens retinal pigment epithel...    30   8.5  
AF012270-1|AAC51757.1|  337|Homo sapiens visual pigment-like rec...    30   8.5  

>BC128401-1|AAI28402.1|  337|Homo sapiens retinal pigment
           epithelium-derived rhodopsin homolog protein.
          Length = 337

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -2

Query: 602 YCAYHNSFTIKIPTTALATTXLNRDALCQSLPVTK 498
           YC YH + +IK  TT+  T  LNRD     + VTK
Sbjct: 207 YCYYHVTLSIKHHTTSDCTESLNRD-WSDQIDVTK 240


>BC128121-1|AAI28122.1|  337|Homo sapiens retinal pigment
           epithelium-derived rhodopsin homolog protein.
          Length = 337

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -2

Query: 602 YCAYHNSFTIKIPTTALATTXLNRDALCQSLPVTK 498
           YC YH + +IK  TT+  T  LNRD     + VTK
Sbjct: 207 YCYYHVTLSIKHHTTSDCTESLNRD-WSDQIDVTK 240


>BC128120-1|AAI28121.1|  337|Homo sapiens retinal pigment
           epithelium-derived rhodopsin homolog protein.
          Length = 337

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -2

Query: 602 YCAYHNSFTIKIPTTALATTXLNRDALCQSLPVTK 498
           YC YH + +IK  TT+  T  LNRD     + VTK
Sbjct: 207 YCYYHVTLSIKHHTTSDCTESLNRD-WSDQIDVTK 240


>AF012270-1|AAC51757.1|  337|Homo sapiens visual pigment-like
           receptor peropsin protein.
          Length = 337

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -2

Query: 602 YCAYHNSFTIKIPTTALATTXLNRDALCQSLPVTK 498
           YC YH + +IK  TT+  T  LNRD     + VTK
Sbjct: 207 YCYYHVTLSIKHHTTSDCTESLNRD-WSDQIDVTK 240


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,064,318
Number of Sequences: 237096
Number of extensions: 1238033
Number of successful extensions: 2107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2107
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7478817430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)