Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10a06
(474 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23 p... 257 2e-68
X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein pr... 256 2e-68
X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17 pro... 256 2e-68
BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein. 256 2e-68
BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23 p... 256 2e-68
BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23 p... 256 2e-68
AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23 p... 256 2e-68
BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal pr... 244 9e-65
BC034378-1|AAH34378.1| 77|Homo sapiens RPL23 protein protein. 146 3e-35
EF657252-3|ABR93246.1| 513|Homo sapiens cytochrome c oxidase su... 32 1.2
AY172136-1|AAO31738.1| 1906|Homo sapiens retinoic acid induced 1... 29 6.2
AL834486-1|CAD39144.1| 568|Homo sapiens hypothetical protein pr... 29 6.2
AL834468-1|CAD39127.1| 1285|Homo sapiens hypothetical protein pr... 29 6.2
AB058723-1|BAB47449.1| 1644|Homo sapiens KIAA1820 protein protein. 29 6.2
>BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 257 bits (629), Expect = 2e-68
Identities = 119/131 (90%), Positives = 128/131 (97%)
Frame = +2
Query: 26 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 205
MSKRGRGGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM 60
Query: 206 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 385
++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGP
Sbjct: 61 VMATVKKGKPELRKKVRPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 386 VAKECADLWPR 418
VAKECADLWPR
Sbjct: 121 VAKECADLWPR 131
>X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein
protein.
Length = 140
Score = 256 bits (628), Expect = 2e-68
Identities = 119/131 (90%), Positives = 128/131 (97%)
Frame = +2
Query: 26 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 205
MSKRGRGGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM 60
Query: 206 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 385
++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGP
Sbjct: 61 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 386 VAKECADLWPR 418
VAKECADLWPR
Sbjct: 121 VAKECADLWPR 131
>X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17
protein.
Length = 140
Score = 256 bits (628), Expect = 2e-68
Identities = 119/131 (90%), Positives = 128/131 (97%)
Frame = +2
Query: 26 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 205
MSKRGRGGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM 60
Query: 206 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 385
++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGP
Sbjct: 61 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 386 VAKECADLWPR 418
VAKECADLWPR
Sbjct: 121 VAKECADLWPR 131
>BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein.
Length = 140
Score = 256 bits (628), Expect = 2e-68
Identities = 119/131 (90%), Positives = 128/131 (97%)
Frame = +2
Query: 26 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 205
MSKRGRGGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM 60
Query: 206 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 385
++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGP
Sbjct: 61 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 386 VAKECADLWPR 418
VAKECADLWPR
Sbjct: 121 VAKECADLWPR 131
>BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 256 bits (628), Expect = 2e-68
Identities = 119/131 (90%), Positives = 128/131 (97%)
Frame = +2
Query: 26 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 205
MSKRGRGGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM 60
Query: 206 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 385
++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGP
Sbjct: 61 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 386 VAKECADLWPR 418
VAKECADLWPR
Sbjct: 121 VAKECADLWPR 131
>BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 256 bits (628), Expect = 2e-68
Identities = 119/131 (90%), Positives = 128/131 (97%)
Frame = +2
Query: 26 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 205
MSKRGRGGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM 60
Query: 206 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 385
++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGP
Sbjct: 61 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 386 VAKECADLWPR 418
VAKECADLWPR
Sbjct: 121 VAKECADLWPR 131
>AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 256 bits (628), Expect = 2e-68
Identities = 119/131 (90%), Positives = 128/131 (97%)
Frame = +2
Query: 26 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 205
MSKRGRGGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM 60
Query: 206 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 385
++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGP
Sbjct: 61 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 386 VAKECADLWPR 418
VAKECADLWPR
Sbjct: 121 VAKECADLWPR 131
>BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal
protein L23 protein.
Length = 134
Score = 244 bits (598), Expect = 9e-65
Identities = 113/125 (90%), Positives = 122/125 (97%)
Frame = +2
Query: 44 GGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVK 223
GGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVK
Sbjct: 1 GGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVK 60
Query: 224 KGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECA 403
KGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECA
Sbjct: 61 KGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECA 120
Query: 404 DLWPR 418
DLWPR
Sbjct: 121 DLWPR 125
>BC034378-1|AAH34378.1| 77|Homo sapiens RPL23 protein protein.
Length = 77
Score = 146 bits (355), Expect = 3e-35
Identities = 68/75 (90%), Positives = 74/75 (98%)
Frame = +2
Query: 26 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 205
MSKRGRGGS+GAKFRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM 60
Query: 206 IVATVKKGKPELRKK 250
++ATVKKGKPELRKK
Sbjct: 61 VMATVKKGKPELRKK 75
>EF657252-3|ABR93246.1| 513|Homo sapiens cytochrome c oxidase
subunit I protein.
Length = 513
Score = 31.9 bits (69), Expect = 1.2
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = -1
Query: 216 VATIMSPEPAAGSLFRRPLIPW----TAITYRFFAPVLSAQLITAPTGRPREIRNFAPAE 49
+ TI++ +P A + ++ PL W TA+ + PVL+A + T R F PA
Sbjct: 165 ITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLYLPVLAAGITMLLTDRNLNTTFFDPAG 224
Query: 48 PPRPLL 31
P+L
Sbjct: 225 GGDPIL 230
>AY172136-1|AAO31738.1| 1906|Homo sapiens retinoic acid induced 1
protein.
Length = 1906
Score = 29.5 bits (63), Expect = 6.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 417 RGHKSAHSLATGPVMAEPFISPLLLTMTP 331
+G AH L+ GP+ P++ P LL +TP
Sbjct: 1450 KGRAGAHGLSKGPLEKRPYLGPALL-LTP 1477
>AL834486-1|CAD39144.1| 568|Homo sapiens hypothetical protein
protein.
Length = 568
Score = 29.5 bits (63), Expect = 6.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 417 RGHKSAHSLATGPVMAEPFISPLLLTMTP 331
+G AH L+ GP+ P++ P LL +TP
Sbjct: 112 KGRAGAHGLSKGPLEKRPYLGPALL-LTP 139
>AL834468-1|CAD39127.1| 1285|Homo sapiens hypothetical protein
protein.
Length = 1285
Score = 29.5 bits (63), Expect = 6.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 417 RGHKSAHSLATGPVMAEPFISPLLLTMTP 331
+G AH L+ GP+ P++ P LL +TP
Sbjct: 829 KGRAGAHGLSKGPLEKRPYLGPALL-LTP 856
>AB058723-1|BAB47449.1| 1644|Homo sapiens KIAA1820 protein protein.
Length = 1644
Score = 29.5 bits (63), Expect = 6.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 417 RGHKSAHSLATGPVMAEPFISPLLLTMTP 331
+G AH L+ GP+ P++ P LL +TP
Sbjct: 1454 KGRAGAHGLSKGPLEKRPYLGPALL-LTP 1481
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,241,748
Number of Sequences: 237096
Number of extensions: 1699990
Number of successful extensions: 4288
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4283
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4156838854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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