Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060129.seq
         (681 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC040436-1|AAH40436.1|  483|Homo sapiens splicing factor, argini...    31   5.0  
AL353771-5|CAI22334.1|  483|Homo sapiens splicing factor, argini...    31   5.0  
EF539869-1|ABQ14697.1|   86|Homo sapiens putative reverse transc...    30   8.8  

>BC040436-1|AAH40436.1|  483|Homo sapiens splicing factor,
           arginine/serine-rich 11 protein.
          Length = 483

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
 Frame = +2

Query: 239 TGTRPQPARASAACTGRTKASSRQEKKRGDRWPSPRTHL*GHK--IFRKRKTEQRLRFPS 412
           + +R +  R S + T R+    R  K++  R PSPR H    K    ++R  ++R R  S
Sbjct: 338 SASRERRRRRSRSGT-RSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTS 396

Query: 413 RKCREASVCRDRTVREHY*KDKTXXXXXXXXXXXXXXTQEKKSEK 547
           +K +     +DR  +    KD                 +EKK EK
Sbjct: 397 KKKKSKDKEKDRERKSESDKDVKVTRDYDEEEQGYDSEKEKKEEK 441


>AL353771-5|CAI22334.1|  483|Homo sapiens splicing factor,
           arginine/serine-rich 11 protein.
          Length = 483

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
 Frame = +2

Query: 239 TGTRPQPARASAACTGRTKASSRQEKKRGDRWPSPRTHL*GHK--IFRKRKTEQRLRFPS 412
           + +R +  R S + T R+    R  K++  R PSPR H    K    ++R  ++R R  S
Sbjct: 338 SASRERRRRRSRSGT-RSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTS 396

Query: 413 RKCREASVCRDRTVREHY*KDKTXXXXXXXXXXXXXXTQEKKSEK 547
           +K +     +DR  +    KD                 +EKK EK
Sbjct: 397 KKKKSKDKEKDRERKSESDKDVKVTRDYDEEEQGYDSEKEKKEEK 441


>EF539869-1|ABQ14697.1|   86|Homo sapiens putative reverse
           transcriptase protein.
          Length = 86

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 562 NCTLVFLTLLFLGPVIRVEVPSARKPSRFI 473
           NC L +  LLF GPV+R+   +   P+ F+
Sbjct: 2   NCLLKYQALLFEGPVLRLHTCATLNPATFL 31


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,874,461
Number of Sequences: 237096
Number of extensions: 1221938
Number of successful extensions: 2762
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2762
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)