Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0014
         (486 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC032446-1|AAH32446.1|  767|Homo sapiens cold shock domain conta...    31   2.2  
AY358546-1|AAQ88910.1|  592|Homo sapiens ROR-alpha protein.            31   2.2  
AY049788-1|AAL15445.1|  708|Homo sapiens NRAS-related protein pr...    31   2.2  
AL096773-5|CAI18825.1|  798|Homo sapiens cold shock domain conta...    31   2.2  
AL096773-4|CAI18826.1|  767|Homo sapiens cold shock domain conta...    31   2.2  
AK022528-1|BAB14080.1|  767|Homo sapiens protein ( Homo sapiens ...    31   2.2  
AK022516-1|BAB14073.1|  767|Homo sapiens protein ( Homo sapiens ...    31   2.2  
AF502591-1|AAQ07460.1|  982|Homo sapiens BRCC1 protein.                31   2.2  
AF070542-1|AAC28634.1|  467|Homo sapiens unknown protein.              31   2.2  
AB020692-1|BAA74908.2|  826|Homo sapiens KIAA0885 protein protein.     31   2.2  

>BC032446-1|AAH32446.1|  767|Homo sapiens cold shock domain
           containing E1, RNA-binding protein.
          Length = 767

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 12/67 (17%), Positives = 32/67 (47%)
 Frame = +2

Query: 221 KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDVQHRSGKKSRIFVTIPR 400
           K +L  ++   ++EF   +   +  A + R    G+ +  D+ ++H  G  +++   +P 
Sbjct: 186 KGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPS 245

Query: 401 FDEGRPV 421
            ++  P+
Sbjct: 246 KNQNDPL 252


>AY358546-1|AAQ88910.1|  592|Homo sapiens ROR-alpha protein.
          Length = 592

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 444 SSSTVPNVTGRPSSKRGIVTNIRDFLPDLCCTSTSI 337
           S+STVPN+T  P++ +   T +    PD+   S S+
Sbjct: 421 STSTVPNMTDAPTAPKAGTTTVAPSAPDISANSRSL 456


>AY049788-1|AAL15445.1|  708|Homo sapiens NRAS-related protein
           protein.
          Length = 708

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 12/67 (17%), Positives = 32/67 (47%)
 Frame = +2

Query: 221 KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDVQHRSGKKSRIFVTIPR 400
           K +L  ++   ++EF   +   +  A + R    G+ +  D+ ++H  G  +++   +P 
Sbjct: 186 KGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPS 245

Query: 401 FDEGRPV 421
            ++  P+
Sbjct: 246 KNQNDPL 252


>AL096773-5|CAI18825.1|  798|Homo sapiens cold shock domain
           containing E1, RNA-binding protein.
          Length = 798

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 12/67 (17%), Positives = 32/67 (47%)
 Frame = +2

Query: 221 KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDVQHRSGKKSRIFVTIPR 400
           K +L  ++   ++EF   +   +  A + R    G+ +  D+ ++H  G  +++   +P 
Sbjct: 217 KGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPS 276

Query: 401 FDEGRPV 421
            ++  P+
Sbjct: 277 KNQNDPL 283


>AL096773-4|CAI18826.1|  767|Homo sapiens cold shock domain
           containing E1, RNA-binding protein.
          Length = 767

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 12/67 (17%), Positives = 32/67 (47%)
 Frame = +2

Query: 221 KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDVQHRSGKKSRIFVTIPR 400
           K +L  ++   ++EF   +   +  A + R    G+ +  D+ ++H  G  +++   +P 
Sbjct: 186 KGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPS 245

Query: 401 FDEGRPV 421
            ++  P+
Sbjct: 246 KNQNDPL 252


>AK022528-1|BAB14080.1|  767|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12466 fis, clone NT2RM1000826, highly similar to
           UNR PROTEIN. ).
          Length = 767

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 12/67 (17%), Positives = 32/67 (47%)
 Frame = +2

Query: 221 KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDVQHRSGKKSRIFVTIPR 400
           K +L  ++   ++EF   +   +  A + R    G+ +  D+ ++H  G  +++   +P 
Sbjct: 186 KGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPS 245

Query: 401 FDEGRPV 421
            ++  P+
Sbjct: 246 KNQNDPL 252


>AK022516-1|BAB14073.1|  767|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12454 fis, clone NT2RM1000555, highly similar to
           UNR PROTEIN. ).
          Length = 767

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 12/67 (17%), Positives = 32/67 (47%)
 Frame = +2

Query: 221 KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDVQHRSGKKSRIFVTIPR 400
           K +L  ++   ++EF   +   +  A + R    G+ +  D+ ++H  G  +++   +P 
Sbjct: 186 KGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPS 245

Query: 401 FDEGRPV 421
            ++  P+
Sbjct: 246 KNQNDPL 252


>AF502591-1|AAQ07460.1|  982|Homo sapiens BRCC1 protein.
          Length = 982

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 444 SSSTVPNVTGRPSSKRGIVTNIRDFLPDLCCTSTSI 337
           S+STVPN+T  P++ +   T +    PD+   S S+
Sbjct: 421 STSTVPNMTDAPTAPKAGTTTVAPSAPDISANSRSL 456


>AF070542-1|AAC28634.1|  467|Homo sapiens unknown protein.
          Length = 467

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 12/67 (17%), Positives = 32/67 (47%)
 Frame = +2

Query: 221 KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDVQHRSGKKSRIFVTIPR 400
           K +L  ++   ++EF   +   +  A + R    G+ +  D+ ++H  G  +++   +P 
Sbjct: 186 KGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPS 245

Query: 401 FDEGRPV 421
            ++  P+
Sbjct: 246 KNQNDPL 252


>AB020692-1|BAA74908.2|  826|Homo sapiens KIAA0885 protein protein.
          Length = 826

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 12/67 (17%), Positives = 32/67 (47%)
 Frame = +2

Query: 221 KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDVQHRSGKKSRIFVTIPR 400
           K +L  ++   ++EF   +   +  A + R    G+ +  D+ ++H  G  +++   +P 
Sbjct: 245 KGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPS 304

Query: 401 FDEGRPV 421
            ++  P+
Sbjct: 305 KNQNDPL 311


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,670,085
Number of Sequences: 237096
Number of extensions: 1552301
Number of successful extensions: 3011
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3011
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4384610846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)