Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30118
(788 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY051936-1|AAK93360.1| 393|Drosophila melanogaster LD41588p pro... 226 3e-59
AE013599-1375|AAF58599.2| 393|Drosophila melanogaster CG8975-PA... 226 3e-59
U09370-1|AAA56996.1| 214|Drosophila melanogaster ribonucleoside... 167 2e-41
DQ138932-1|ABA86538.1| 1387|Drosophila melanogaster CG12105 prot... 29 7.2
AE014296-300|AAF47521.2| 1509|Drosophila melanogaster CG12105-PA... 29 7.2
>AY051936-1|AAK93360.1| 393|Drosophila melanogaster LD41588p
protein.
Length = 393
Score = 226 bits (552), Expect = 3e-59
Identities = 135/263 (51%), Positives = 158/263 (60%), Gaps = 1/263 (0%)
Frame = +3
Query: 3 FIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIR 182
FI HVLAFFAASDGIVNENLVERFSQEVQ+TEARCFYGFQIAMENVHSEMYS+LIDTYIR
Sbjct: 130 FISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIR 189
Query: 183 DPKREIFCLMRLRLFPV*RRK-QIGSTVDCKQDCNIW*KDCCLCSCRRNLFLRQFCFHLL 359
DP + + + P +RK + + N + + F F
Sbjct: 190 DPHQREYLFNAIETMPAVKRKADWALSWISSKSANFGERIIAFAAVEGIFFSGSFASIFW 249
Query: 360 AQKAGPYAGTYIQ**TYFQG*GSAYRFCLSDVPTLSSKAN*GMCPAYYKSAVVIEQEFLT 539
+K G G + G F + L + + AV IEQEFLT
Sbjct: 250 LKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQHLVQRPKRERIIEIIRDAVAIEQEFLT 309
Query: 540 DALPVRLLGMNCELMSQYIEFVADRLLVDLIGGKHYNTKNPFGLS*ILISAGKGKTNFFE 719
DALPV L+GMNC+LMSQYIEFVADRLLV+L GK YNTKNPF +IS GKTNFFE
Sbjct: 310 DALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYNTKNPFNFM-EMISL-DGKTNFFE 367
Query: 720 KKVGDYQKCRG*LAIALTMWFTL 788
KKVG+YQ+ G ++ L FTL
Sbjct: 368 KKVGEYQR-MGVVSNPLDNVFTL 389
Score = 124 bits (299), Expect = 1e-28
Identities = 59/100 (59%), Positives = 72/100 (72%)
Frame = +1
Query: 235 KEESRLGLQWIASKTATFGERIVAFAAVEXXXXXXXXXXXXWLKKRGLMPGLTFSNELIS 414
K ++ L WI+SK+A FGERI+AFAAVE WLKKRGLMPGLTFSNELIS
Sbjct: 208 KRKADWALSWISSKSANFGERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELIS 267
Query: 415 RDEGLHTDFACLMFQHLVQKPTKECVLHIIKVQ*SLNKSF 534
RDEGLH DFA LMFQHLVQ+P +E ++ II+ ++ + F
Sbjct: 268 RDEGLHCDFAVLMFQHLVQRPKRERIIEIIRDAVAIEQEF 307
Score = 43.2 bits (97), Expect = 4e-04
Identities = 15/29 (51%), Positives = 24/29 (82%)
Frame = +2
Query: 191 ERDFLFNAVETLPCVKKKADWVYSGLQAR 277
+R++LFNA+ET+P VK+KADW S + ++
Sbjct: 193 QREYLFNAIETMPAVKRKADWALSWISSK 221
>AE013599-1375|AAF58599.2| 393|Drosophila melanogaster CG8975-PA
protein.
Length = 393
Score = 226 bits (552), Expect = 3e-59
Identities = 135/263 (51%), Positives = 158/263 (60%), Gaps = 1/263 (0%)
Frame = +3
Query: 3 FIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIR 182
FI HVLAFFAASDGIVNENLVERFSQEVQ+TEARCFYGFQIAMENVHSEMYS+LIDTYIR
Sbjct: 130 FISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIR 189
Query: 183 DPKREIFCLMRLRLFPV*RRK-QIGSTVDCKQDCNIW*KDCCLCSCRRNLFLRQFCFHLL 359
DP + + + P +RK + + N + + F F
Sbjct: 190 DPHQREYLFNAIETMPAVKRKADWALSWISSKSANFGERIIAFAAVEGIFFSGSFASIFW 249
Query: 360 AQKAGPYAGTYIQ**TYFQG*GSAYRFCLSDVPTLSSKAN*GMCPAYYKSAVVIEQEFLT 539
+K G G + G F + L + + AV IEQEFLT
Sbjct: 250 LKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQHLVQRPKRERIIEIIRDAVAIEQEFLT 309
Query: 540 DALPVRLLGMNCELMSQYIEFVADRLLVDLIGGKHYNTKNPFGLS*ILISAGKGKTNFFE 719
DALPV L+GMNC+LMSQYIEFVADRLLV+L GK YNTKNPF +IS GKTNFFE
Sbjct: 310 DALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYNTKNPFNFM-EMISL-DGKTNFFE 367
Query: 720 KKVGDYQKCRG*LAIALTMWFTL 788
KKVG+YQ+ G ++ L FTL
Sbjct: 368 KKVGEYQR-MGVVSNPLDNVFTL 389
Score = 124 bits (299), Expect = 1e-28
Identities = 59/100 (59%), Positives = 72/100 (72%)
Frame = +1
Query: 235 KEESRLGLQWIASKTATFGERIVAFAAVEXXXXXXXXXXXXWLKKRGLMPGLTFSNELIS 414
K ++ L WI+SK+A FGERI+AFAAVE WLKKRGLMPGLTFSNELIS
Sbjct: 208 KRKADWALSWISSKSANFGERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELIS 267
Query: 415 RDEGLHTDFACLMFQHLVQKPTKECVLHIIKVQ*SLNKSF 534
RDEGLH DFA LMFQHLVQ+P +E ++ II+ ++ + F
Sbjct: 268 RDEGLHCDFAVLMFQHLVQRPKRERIIEIIRDAVAIEQEF 307
Score = 43.2 bits (97), Expect = 4e-04
Identities = 15/29 (51%), Positives = 24/29 (82%)
Frame = +2
Query: 191 ERDFLFNAVETLPCVKKKADWVYSGLQAR 277
+R++LFNA+ET+P VK+KADW S + ++
Sbjct: 193 QREYLFNAIETMPAVKRKADWALSWISSK 221
>U09370-1|AAA56996.1| 214|Drosophila melanogaster
ribonucleoside-diphosphate reductasesmall subunit
protein.
Length = 214
Score = 167 bits (406), Expect = 2e-41
Identities = 99/214 (46%), Positives = 119/214 (55%), Gaps = 1/214 (0%)
Frame = +3
Query: 60 LVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRDPKREIFCLMRLRLFPV*R 239
LVERFSQEVQ+TEARCFYGFQIAMENVHSEMYS+LIDTYIRDP + + + P +
Sbjct: 1 LVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIETMPAVK 60
Query: 240 RK-QIGSTVDCKQDCNIW*KDCCLCSCRRNLFLRQFCFHLLAQKAGPYAGTYIQ**TYFQ 416
RK + + N + + F F +K G G +
Sbjct: 61 RKADWALSWISSKSANFGERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISR 120
Query: 417 G*GSAYRFCLSDVPTLSSKAN*GMCPAYYKSAVVIEQEFLTDALPVRLLGMNCELMSQYI 596
G F + L + + AV IEQEFLTDALPV L+GMNC+LMSQYI
Sbjct: 121 DEGLHCDFAVLMFQHLVQRPKRERIIEIIRDAVAIEQEFLTDALPVNLIGMNCDLMSQYI 180
Query: 597 EFVADRLLVDLIGGKHYNTKNPFGLS*ILISAGK 698
EFVADRLLV+L GK YNTKNPF ++ GK
Sbjct: 181 EFVADRLLVELGVGKIYNTKNPFNFMEMISLDGK 214
Score = 124 bits (299), Expect = 1e-28
Identities = 59/100 (59%), Positives = 72/100 (72%)
Frame = +1
Query: 235 KEESRLGLQWIASKTATFGERIVAFAAVEXXXXXXXXXXXXWLKKRGLMPGLTFSNELIS 414
K ++ L WI+SK+A FGERI+AFAAVE WLKKRGLMPGLTFSNELIS
Sbjct: 60 KRKADWALSWISSKSANFGERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELIS 119
Query: 415 RDEGLHTDFACLMFQHLVQKPTKECVLHIIKVQ*SLNKSF 534
RDEGLH DFA LMFQHLVQ+P +E ++ II+ ++ + F
Sbjct: 120 RDEGLHCDFAVLMFQHLVQRPKRERIIEIIRDAVAIEQEF 159
Score = 43.2 bits (97), Expect = 4e-04
Identities = 15/29 (51%), Positives = 24/29 (82%)
Frame = +2
Query: 191 ERDFLFNAVETLPCVKKKADWVYSGLQAR 277
+R++LFNA+ET+P VK+KADW S + ++
Sbjct: 45 QREYLFNAIETMPAVKRKADWALSWISSK 73
>DQ138932-1|ABA86538.1| 1387|Drosophila melanogaster CG12105 protein.
Length = 1387
Score = 29.1 bits (62), Expect = 7.2
Identities = 22/95 (23%), Positives = 40/95 (42%)
Frame = -1
Query: 455 NIRQAKSVCRPSSLEISSLLNVSPGIRPRFLSQKMEAKLPEKKIPSTAAKATILSPNVAV 276
N+ A R +SL+++ L+ + + P + + LPE K P +A + + V
Sbjct: 1004 NLAPAGERTRRASLKLAELVGETVLVVPAATAAPQDP-LPESKEPIIDQEALVPATPQQV 1062
Query: 275 LLAIHCRPNLLSSLHREESQPH*TENLSLRISDVG 171
+ P + ++L EES P S + G
Sbjct: 1063 AIGADIAPQIAATLVHEESSPEQQSQSSAEATKAG 1097
>AE014296-300|AAF47521.2| 1509|Drosophila melanogaster CG12105-PA
protein.
Length = 1509
Score = 29.1 bits (62), Expect = 7.2
Identities = 22/95 (23%), Positives = 40/95 (42%)
Frame = -1
Query: 455 NIRQAKSVCRPSSLEISSLLNVSPGIRPRFLSQKMEAKLPEKKIPSTAAKATILSPNVAV 276
N+ A R +SL+++ L+ + + P + + LPE K P +A + + V
Sbjct: 1098 NLAPAGEGTRRASLKLAELVGETVLVVPAATAAPQDP-LPESKEPIIDQEALVPATPQQV 1156
Query: 275 LLAIHCRPNLLSSLHREESQPH*TENLSLRISDVG 171
+ P + ++L EES P S + G
Sbjct: 1157 AIGADIAPQIAATLVHEESSPEQQSQSSAEATKAG 1191
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,523,288
Number of Sequences: 53049
Number of extensions: 791729
Number of successful extensions: 2309
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2307
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3654740856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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