Silkworm BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00012
         (730 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094841-1|AAM11194.1|  204|Drosophila melanogaster RE01373p pro...   131   8e-31
AF030251-1|AAB84223.1|  204|Drosophila melanogaster ribosomal L1...   131   8e-31
U31961-10|AAA84411.1|  372|Drosophila melanogaster UBXIIB protein.     29   6.5  
AE014297-2260|AAN13719.1|  372|Drosophila melanogaster CG10388-P...    29   6.5  

>AY094841-1|AAM11194.1|  204|Drosophila melanogaster RE01373p
           protein.
          Length = 204

 Score =  131 bits (317), Expect = 8e-31
 Identities = 59/86 (68%), Positives = 65/86 (75%)
 Frame = +2

Query: 251 GSTYGKPKSHGVNQLKPTRNLQSIADEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDP 430
           G TYGKPKSHGVNQLKP R LQSIA+E            +SYW+AQD+SYKYFEVIL+D 
Sbjct: 78  GCTYGKPKSHGVNQLKPYRGLQSIAEERVGRRLGGLRVLNSYWIAQDASYKYFEVILIDT 137

Query: 431 SHKAIRRDPKINWIVNAVHKHREMRG 508
            H AIRRDPKINWI   VHKHRE+RG
Sbjct: 138 HHSAIRRDPKINWICKHVHKHRELRG 163



 Score =  116 bits (278), Expect = 4e-26
 Identities = 50/57 (87%), Positives = 56/57 (98%)
 Frame = +3

Query: 21  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 191
           MGAYRY+QELYRKK SDVMR+LLR+RVWQYRQLT++HR+PRPTRPDKARRLGYRAKQ
Sbjct: 1   MGAYRYMQELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARRLGYRAKQ 57



 Score = 67.3 bits (157), Expect = 2e-11
 Identities = 30/41 (73%), Positives = 35/41 (85%)
 Frame = +1

Query: 508 LTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 630
           LTSAG+SSRG+GKG+RYSQT GGSRRAAW R+N   + RKR
Sbjct: 164 LTSAGKSSRGIGKGYRYSQTIGGSRRAAWKRKNREHMHRKR 204


>AF030251-1|AAB84223.1|  204|Drosophila melanogaster ribosomal L15
           (YL10) protein homologueprotein.
          Length = 204

 Score =  131 bits (317), Expect = 8e-31
 Identities = 59/86 (68%), Positives = 65/86 (75%)
 Frame = +2

Query: 251 GSTYGKPKSHGVNQLKPTRNLQSIADEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDP 430
           G TYGKPKSHGVNQLKP R LQSIA+E            +SYW+AQD+SYKYFEVIL+D 
Sbjct: 78  GCTYGKPKSHGVNQLKPYRGLQSIAEERVGRRLGGLRVLNSYWIAQDASYKYFEVILIDT 137

Query: 431 SHKAIRRDPKINWIVNAVHKHREMRG 508
            H AIRRDPKINWI   VHKHRE+RG
Sbjct: 138 HHSAIRRDPKINWICKHVHKHRELRG 163



 Score =  116 bits (278), Expect = 4e-26
 Identities = 50/57 (87%), Positives = 56/57 (98%)
 Frame = +3

Query: 21  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 191
           MGAYRY+QELYRKK SDVMR+LLR+RVWQYRQLT++HR+PRPTRPDKARRLGYRAKQ
Sbjct: 1   MGAYRYMQELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARRLGYRAKQ 57



 Score = 67.3 bits (157), Expect = 2e-11
 Identities = 30/41 (73%), Positives = 35/41 (85%)
 Frame = +1

Query: 508 LTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 630
           LTSAG+SSRG+GKG+RYSQT GGSRRAAW R+N   + RKR
Sbjct: 164 LTSAGKSSRGIGKGYRYSQTIGGSRRAAWKRKNREHMHRKR 204


>U31961-10|AAA84411.1|  372|Drosophila melanogaster UBXIIB protein.
          Length = 372

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 505 WLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 630
           W+  AG       K  RYS++  GS    WL  N L+ R ++
Sbjct: 242 WMAIAGECPEDPTKSKRYSESLAGSLLPDWLGTNGLRRRGRQ 283


>AE014297-2260|AAN13719.1|  372|Drosophila melanogaster CG10388-PC,
           isoform C protein.
          Length = 372

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 505 WLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 630
           W+  AG       K  RYS++  GS    WL  N L+ R ++
Sbjct: 242 WMAIAGECPEDPTKSKRYSESLAGSLLPDWLGTNGLRRRGRQ 283


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,928,128
Number of Sequences: 53049
Number of extensions: 716147
Number of successful extensions: 2196
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2196
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)