Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0081.Seq
         (673 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X97197-1|CAA65831.1|  366|Drosophila melanogaster spliceosomal p...    29   7.6  
M24841-1|AAA28435.1|  491|Drosophila melanogaster protein ( D.me...    29   7.6  
BT023489-1|AAY84889.1|  347|Drosophila melanogaster RE50839p pro...    29   7.6  
AE014298-857|AAF46136.1|  347|Drosophila melanogaster CG3780-PA ...    29   7.6  

>X97197-1|CAA65831.1|  366|Drosophila melanogaster spliceosomal
           protein protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 357 ERDKTSSIPTKNFKRQNLEKNVTDSNYFFIICNKPISVNYLFIEDN 220
           E  K+ S    NF          D+     +CN+PISV+Y F +D+
Sbjct: 156 ETGKSKSFAFINFASFEASDAAMDAMNGQYLCNRPISVSYAFKKDH 201


>M24841-1|AAA28435.1|  491|Drosophila melanogaster protein (
           D.melanogaster cyclinA mRNA, complete cds. ).
          Length = 491

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -3

Query: 353 ETKHRPSPRKTSNAK-ISKKM*QTLIISSLYVINRYRSITSLLKIIAFFL 207
           E KHRP PR     K IS  M   LI   + V   Y+  T  L +  F+L
Sbjct: 215 EKKHRPKPRYMRRQKDISHNMRSILIDWLVEVSEEYKLDTETLYLSVFYL 264


>BT023489-1|AAY84889.1|  347|Drosophila melanogaster RE50839p
           protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 357 ERDKTSSIPTKNFKRQNLEKNVTDSNYFFIICNKPISVNYLFIEDN 220
           E  K+ S    NF          D+     +CN+PISV+Y F +D+
Sbjct: 137 ETGKSKSFAFINFASFEASDAAMDAMNGQYLCNRPISVSYAFKKDH 182


>AE014298-857|AAF46136.1|  347|Drosophila melanogaster CG3780-PA
           protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 357 ERDKTSSIPTKNFKRQNLEKNVTDSNYFFIICNKPISVNYLFIEDN 220
           E  K+ S    NF          D+     +CN+PISV+Y F +D+
Sbjct: 137 ETGKSKSFAFINFASFEASDAAMDAMNGQYLCNRPISVSYAFKKDH 182


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,573,179
Number of Sequences: 53049
Number of extensions: 423067
Number of successful extensions: 830
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2910007350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)