Silkworm BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0054
         (741 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-793|AAF46079.2|  300|Drosophila melanogaster CG15770-PA...    33   0.41 
X51937-1|CAA36201.1|  984|Drosophila melanogaster protein ( Dros...    33   0.54 
X15469-1|CAA33496.1|  633|Drosophila melanogaster protein ( Dros...    33   0.54 
AF202034-1|AAF17568.1|  799|Drosophila melanogaster endoplasmic ...    29   6.6  
AF132553-1|AAD27852.1|  801|Drosophila melanogaster BcDNA.GM0288...    29   6.6  
AF047037-1|AAC27447.1|  801|Drosophila melanogaster transitional...    29   6.6  
AE013599-984|AAF58863.1|  801|Drosophila melanogaster CG2331-PA,...    29   6.6  
AE014297-4816|AAF57203.2|  644|Drosophila melanogaster CG2112-PA...    29   8.8  

>AE014298-793|AAF46079.2|  300|Drosophila melanogaster CG15770-PA
           protein.
          Length = 300

 Score = 33.1 bits (72), Expect = 0.41
 Identities = 13/41 (31%), Positives = 28/41 (68%)
 Frame = +3

Query: 63  GIVNDDERDDLYQIISRLAHTQNLKLVDDIFTESCSTITKQ 185
           GI+ND + + ++Q +SRL+ + +++ VD++  E+   I +Q
Sbjct: 38  GILNDPDPESIFQEVSRLSDSTDMRSVDELLQEAERLIQQQ 78


>X51937-1|CAA36201.1|  984|Drosophila melanogaster protein (
           Drosophila melanogasterNOF-FB transposable element. ).
          Length = 984

 Score = 32.7 bits (71), Expect = 0.54
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 459 ILLEDSTKLFDIFSKEDYLHFTDFVLPNKIYKDKLPHLHSVYKKYSDLNQMYDSKD 626
           +L+E+ T L   + + D  H    +    ++K KLP+L   Y +   L    ++KD
Sbjct: 360 LLMEERTDLPPCYIRLDIAHLIKMICRKNVFKSKLPNLKDFYTRCIGLATTCETKD 415


>X15469-1|CAA33496.1|  633|Drosophila melanogaster protein (
           Drosophila melanogasterDNA for complete foldback (FB)
           transposable n.  ).
          Length = 633

 Score = 32.7 bits (71), Expect = 0.54
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 459 ILLEDSTKLFDIFSKEDYLHFTDFVLPNKIYKDKLPHLHSVYKKYSDLNQMYDSKD 626
           +L+E+ T L   + + D  H    +    ++K KLP+L   Y +   L    ++KD
Sbjct: 432 LLMEERTDLPPCYIRLDIAHLIKMICRKNVFKSKLPNLKDFYTRCIGLATTCETKD 487


>AF202034-1|AAF17568.1|  799|Drosophila melanogaster endoplasmic
           reticulum membranefusion protein protein.
          Length = 799

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 120 HTQNLKLVDDIFTESCSTITKQHFYVQLAKYCVKNKLYKV 239
           HT+N+KL DD+  E  +  +  H    LA  C +  L ++
Sbjct: 381 HTKNMKLHDDVDLEQIAAESHGHVGADLASLCSEAALQQI 420


>AF132553-1|AAD27852.1|  801|Drosophila melanogaster BcDNA.GM02885
           protein.
          Length = 801

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 120 HTQNLKLVDDIFTESCSTITKQHFYVQLAKYCVKNKLYKV 239
           HT+N+KL DD+  E  +  +  H    LA  C +  L ++
Sbjct: 381 HTKNMKLHDDVDLEQIAAESHGHVGADLASLCSEAALQQI 420


>AF047037-1|AAC27447.1|  801|Drosophila melanogaster transitional
           endoplasmic reticulumATPase TER94 protein.
          Length = 801

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 120 HTQNLKLVDDIFTESCSTITKQHFYVQLAKYCVKNKLYKV 239
           HT+N+KL DD+  E  +  +  H    LA  C +  L ++
Sbjct: 381 HTKNMKLHDDVDLEQIAAESHGHVGADLASLCSEAALQQI 420


>AE013599-984|AAF58863.1|  801|Drosophila melanogaster CG2331-PA,
           isoform A protein.
          Length = 801

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 120 HTQNLKLVDDIFTESCSTITKQHFYVQLAKYCVKNKLYKV 239
           HT+N+KL DD+  E  +  +  H    LA  C +  L ++
Sbjct: 381 HTKNMKLHDDVDLEQIAAESHGHVGADLASLCSEAALQQI 420


>AE014297-4816|AAF57203.2|  644|Drosophila melanogaster CG2112-PA
           protein.
          Length = 644

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 229 SLFFTQYFANCT*KCCLVMVEQDSVKMS-STNFKF*VW 119
           + +  +YF +CT K C     QD + +S S NF   +W
Sbjct: 312 TFYHDEYFNSCTMKSCTFAGPQDELVVSGSDNFNMFIW 349


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,877,295
Number of Sequences: 53049
Number of extensions: 737712
Number of successful extensions: 1970
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1970
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3355404063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)