Silkworm BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0040
         (740 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF521598-1|AAN62854.1|  400|Drosophila melanogaster MSP-300/nesp...    31   1.6  
AE014134-885|AAZ66446.1| 11707|Drosophila melanogaster CG33715-P...    31   1.6  

>AF521598-1|AAN62854.1|  400|Drosophila melanogaster MSP-300/nesprin
           splice variant protein.
          Length = 400

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 386 RTTKGV-VAAP*TRPQKRRQTEFNRNKKRLNLLSHWDIETKEELGDFSQT 240
           RT +G+ + A     QK+RQ E +  ++ L  L  W IE   EL  F  T
Sbjct: 330 RTQQGITMIANAMHGQKKRQQEIDEYQQHLLELEQWIIEVSAELASFEPT 379


>AE014134-885|AAZ66446.1| 11707|Drosophila melanogaster CG33715-PD,
            isoform D protein.
          Length = 11707

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 386  RTTKGV-VAAP*TRPQKRRQTEFNRNKKRLNLLSHWDIETKEELGDFSQT 240
            RT +G+ + A     QK+RQ E +  ++ L  L  W IE   EL  F  T
Sbjct: 7791 RTQQGITMIANAMHGQKKRQQEIDEYQQHLLELEQWIIEVSAELASFEPT 7840


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,557,172
Number of Sequences: 53049
Number of extensions: 526026
Number of successful extensions: 837
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3355404063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)