Silkworm BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0039
         (395 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-4380|AAF56894.2|   98|Drosophila melanogaster CG11500-P...    71   6e-13
X98094-4|CAA66723.1|  758|Drosophila melanogaster l(2)dlt protein.     27   9.0  
X83414-1|CAA58441.1|  758|Drosophila melanogaster lethal(2)denti...    27   9.0  
AY121647-1|AAM51974.1|  769|Drosophila melanogaster LD21681p pro...    27   9.0  
AY089275-1|AAL90013.1|  315|Drosophila melanogaster AT07689p pro...    27   9.0  
AE014296-1602|AAF50307.2|  315|Drosophila melanogaster CG4477-PB...    27   9.0  
AE013599-3670|AAF47049.1|  769|Drosophila melanogaster CG11295-P...    27   9.0  

>AE014297-4380|AAF56894.2|   98|Drosophila melanogaster CG11500-PA
           protein.
          Length = 98

 Score = 70.9 bits (166), Expect = 6e-13
 Identities = 32/60 (53%), Positives = 37/60 (61%)
 Frame = +1

Query: 76  KQEKLYRAIITLFSIVGFVWGYIVQQFSQSVYXXXXXXXXXXXXTVPPWPMYRRNPLNWQ 255
           K E+  R IIT F IVG V+G  VQQFSQ+VY            T+PPWP+YRRN L WQ
Sbjct: 15  KAERWSRFIITFFGIVGLVYGAFVQQFSQTVYILGAGFVLSSLITIPPWPLYRRNALKWQ 74


>X98094-4|CAA66723.1|  758|Drosophila melanogaster l(2)dlt protein.
          Length = 758

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 245 RGLRRYIGHGGTVRMAASRNPAPRIY 168
           RGL  Y+GH  +V+ AA +   P ++
Sbjct: 125 RGLNSYVGHTRSVKSAAFKRTDPAVF 150


>X83414-1|CAA58441.1|  758|Drosophila melanogaster
           lethal(2)denticleless protein.
          Length = 758

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 245 RGLRRYIGHGGTVRMAASRNPAPRIY 168
           RGL  Y+GH  +V+ AA +   P ++
Sbjct: 125 RGLNSYVGHTRSVKSAAFKRTDPAVF 150


>AY121647-1|AAM51974.1|  769|Drosophila melanogaster LD21681p
           protein.
          Length = 769

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 245 RGLRRYIGHGGTVRMAASRNPAPRIY 168
           RGL  Y+GH  +V+ AA +   P ++
Sbjct: 136 RGLNSYVGHTRSVKSAAFKRTDPAVF 161


>AY089275-1|AAL90013.1|  315|Drosophila melanogaster AT07689p
           protein.
          Length = 315

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 371 LINYCIYLRSKSCTDKF*DNGF 306
           L NYC+ LRS+S    F DN F
Sbjct: 50  LSNYCVSLRSRSAEKFFGDNHF 71


>AE014296-1602|AAF50307.2|  315|Drosophila melanogaster CG4477-PB
           protein.
          Length = 315

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 371 LINYCIYLRSKSCTDKF*DNGF 306
           L NYC+ LRS+S    F DN F
Sbjct: 50  LSNYCVSLRSRSAEKFFGDNHF 71


>AE013599-3670|AAF47049.1|  769|Drosophila melanogaster CG11295-PA
           protein.
          Length = 769

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 245 RGLRRYIGHGGTVRMAASRNPAPRIY 168
           RGL  Y+GH  +V+ AA +   P ++
Sbjct: 136 RGLNSYVGHTRSVKSAAFKRTDPAVF 161


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,446,790
Number of Sequences: 53049
Number of extensions: 285158
Number of successful extensions: 910
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1128794130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)