Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0090
         (413 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-771|AAF46058.2|  123|Drosophila melanogaster CG4111-PA,...   128   2e-30
AE014298-770|AAN09148.1|  123|Drosophila melanogaster CG4111-PB,...   128   2e-30
AY118364-1|AAM48393.1|  123|Drosophila melanogaster RE09547p pro...   128   4e-30
BT030434-1|ABO52854.1|  492|Drosophila melanogaster IP18315p pro...    29   1.8  

>AE014298-771|AAF46058.2|  123|Drosophila melanogaster CG4111-PA,
           isoform A protein.
          Length = 123

 Score =  128 bits (310), Expect = 2e-30
 Identities = 71/122 (58%), Positives = 82/122 (67%)
 Frame = +2

Query: 11  QCEVFRIKDKSIXRSYSNXLRS*RQN*QMLRVAKVTGGVASKLSKIRVVRKAXARVYIVY 190
           +C   RIKDK   +  +  L   +     LRVAKVTGG  SKLSKIRVVRKA ARVYIV 
Sbjct: 5   KCSELRIKDK---KELTKQLDELKNELLSLRVAKVTGGAPSKLSKIRVVRKAIARVYIVM 61

Query: 191 HQKMKVNLRNHYKNXKYKPLXLXAXKTRAMRKAXTKHEAXIKTRKEIRXKSLFPPRVYAV 370
           HQK K NLR  +KN KYKPL L   KTRA+RKA +  +A  KT KEIR +S+FP R +AV
Sbjct: 62  HQKQKENLRKVFKNKKYKPLDLRKKKTRAIRKALSPRDANRKTLKEIRKRSVFPQRKFAV 121

Query: 371 KA 376
           KA
Sbjct: 122 KA 123


>AE014298-770|AAN09148.1|  123|Drosophila melanogaster CG4111-PB,
           isoform B protein.
          Length = 123

 Score =  128 bits (310), Expect = 2e-30
 Identities = 71/122 (58%), Positives = 82/122 (67%)
 Frame = +2

Query: 11  QCEVFRIKDKSIXRSYSNXLRS*RQN*QMLRVAKVTGGVASKLSKIRVVRKAXARVYIVY 190
           +C   RIKDK   +  +  L   +     LRVAKVTGG  SKLSKIRVVRKA ARVYIV 
Sbjct: 5   KCSELRIKDK---KELTKQLDELKNELLSLRVAKVTGGAPSKLSKIRVVRKAIARVYIVM 61

Query: 191 HQKMKVNLRNHYKNXKYKPLXLXAXKTRAMRKAXTKHEAXIKTRKEIRXKSLFPPRVYAV 370
           HQK K NLR  +KN KYKPL L   KTRA+RKA +  +A  KT KEIR +S+FP R +AV
Sbjct: 62  HQKQKENLRKVFKNKKYKPLDLRKKKTRAIRKALSPRDANRKTLKEIRKRSVFPQRKFAV 121

Query: 371 KA 376
           KA
Sbjct: 122 KA 123


>AY118364-1|AAM48393.1|  123|Drosophila melanogaster RE09547p
           protein.
          Length = 123

 Score =  128 bits (308), Expect = 4e-30
 Identities = 71/122 (58%), Positives = 82/122 (67%)
 Frame = +2

Query: 11  QCEVFRIKDKSIXRSYSNXLRS*RQN*QMLRVAKVTGGVASKLSKIRVVRKAXARVYIVY 190
           +C   RIKDK   +  +  L   +     LRVAKVTGG  SKLSKIRVVRKA ARVYIV 
Sbjct: 5   KCSELRIKDK---KELTKQLDELKNELLSLRVAKVTGGSPSKLSKIRVVRKAIARVYIVM 61

Query: 191 HQKMKVNLRNHYKNXKYKPLXLXAXKTRAMRKAXTKHEAXIKTRKEIRXKSLFPPRVYAV 370
           HQK K NLR  +KN KYKPL L   KTRA+RKA +  +A  KT KEIR +S+FP R +AV
Sbjct: 62  HQKQKENLRKVFKNKKYKPLDLRKKKTRAIRKALSPRDANRKTLKEIRKRSVFPQRKFAV 121

Query: 371 KA 376
           KA
Sbjct: 122 KA 123


>BT030434-1|ABO52854.1|  492|Drosophila melanogaster IP18315p
           protein.
          Length = 492

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 382 YSSFNGIDSRWEERFXSDLFPRLDLCFV 299
           Y++F   + +W +    D+F RL LCFV
Sbjct: 46  YTTFFDDNIQWSQMVIKDIFQRLQLCFV 73


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,353,195
Number of Sequences: 53049
Number of extensions: 142668
Number of successful extensions: 494
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1230182214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)