Silkworm BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a15
         (686 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276482-1|CAB81549.1|  769|Drosophila melanogaster putative Sec...    30   3.4  

>AJ276482-1|CAB81549.1|  769|Drosophila melanogaster putative Sec23
           protein protein.
          Length = 769

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
 Frame = +1

Query: 40  TKRARAKRIRLPLEIIDTILQY---LDPISHAKVVGLTTRVKCRLLRDNNVE-DY-LKLT 204
           + R  A R+ +PL  +   L+    L PI +  V  L TR  CR + +   + DY  KL 
Sbjct: 26  SSRIEASRLVVPLACLYQPLKERPDLPPIQYEPV--LCTRSNCRAILNPLCQVDYRAKLW 83

Query: 205 PANYHFTTDQFICNYLGITDHPMTPYLVP 291
             N+ F  +QF   Y  I++      L+P
Sbjct: 84  VCNFCFQRNQFPPQYAAISEQHQPAELIP 112


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,124,549
Number of Sequences: 53049
Number of extensions: 558337
Number of successful extensions: 1457
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1457
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)