Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060157.seq
         (676 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119139-1|AAM50999.1|  615|Drosophila melanogaster RE41430p pro...    79   7e-15
AE014298-1780|AAF48175.2|  615|Drosophila melanogaster CG11138-P...    79   7e-15

>AY119139-1|AAM50999.1|  615|Drosophila melanogaster RE41430p
           protein.
          Length = 615

 Score = 78.6 bits (185), Expect = 7e-15
 Identities = 33/43 (76%), Positives = 38/43 (88%)
 Frame = +1

Query: 247 LAPMPWAMLHEFSEAVCRGCVNYEGADRIEVVLETARQLKRAH 375
           L  MPWAM+++FSEAVCRGCVNYEGADRIE VL+ ARQ+KR H
Sbjct: 15  LPRMPWAMINDFSEAVCRGCVNYEGADRIEAVLDAARQMKRLH 57



 Score = 35.5 bits (78), Expect = 0.067
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +2

Query: 206 MSVMQKRQHCYLCDLP 253
           MS+  KRQHCYLCDLP
Sbjct: 1   MSLQTKRQHCYLCDLP 16


>AE014298-1780|AAF48175.2|  615|Drosophila melanogaster CG11138-PC,
           isoform C protein.
          Length = 615

 Score = 78.6 bits (185), Expect = 7e-15
 Identities = 33/43 (76%), Positives = 38/43 (88%)
 Frame = +1

Query: 247 LAPMPWAMLHEFSEAVCRGCVNYEGADRIEVVLETARQLKRAH 375
           L  MPWAM+++FSEAVCRGCVNYEGADRIE VL+ ARQ+KR H
Sbjct: 15  LPRMPWAMINDFSEAVCRGCVNYEGADRIEAVLDAARQMKRLH 57



 Score = 35.5 bits (78), Expect = 0.067
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +2

Query: 206 MSVMQKRQHCYLCDLP 253
           MS+  KRQHCYLCDLP
Sbjct: 1   MSLQTKRQHCYLCDLP 16


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,654,504
Number of Sequences: 53049
Number of extensions: 628655
Number of successful extensions: 2102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2083
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)