Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40115
         (832 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   139   2e-33
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    34   0.14 
U09277-1|AAC13764.1|  532|Caenorhabditis elegans UNC-17 protein.       29   5.4  
L19621-1|AAC14456.1|  532|Caenorhabditis elegans acetylcholine t...    29   5.4  
AF036701-4|AAB88371.1|  532|Caenorhabditis elegans Uncoordinated...    29   5.4  
U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z50873-3|CAA90761.4|  531|Caenorhabditis elegans Hypothetical pr...    28   9.4  
AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical ...    28   9.4  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  139 bits (337), Expect = 2e-33
 Identities = 64/114 (56%), Positives = 88/114 (77%)
 Frame = +2

Query: 479 PYQDFKGYY*IINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI 658
           P +  +G   I+NDVH++K GDKVGASE+ LLNML ++PFSYGLVV+QVYD GT++ PE+
Sbjct: 144 PTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDDGTLYTPEV 203

Query: 659 LDIKPEDLRAKFQAGVANVAALSLAIGYPTYCFSPHSIANGFKNLFGQSLAVTE 820
           LD+  E+LR +F +GV NVA++SLA+ YPT     HS+ANG +N+ G + AVT+
Sbjct: 204 LDMTTEELRKRFLSGVRNVASVSLAVNYPTLASVAHSLANGLQNMLGVA-AVTD 256



 Score =  127 bits (307), Expect = 8e-30
 Identities = 60/85 (70%), Positives = 69/85 (81%)
 Frame = +3

Query: 255 LDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNT 434
           L  NP+LEKLLPHI  NVGFVFT+ DL E+R KLLEN+  APA+ GAIAP  V +P  NT
Sbjct: 69  LGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNT 128

Query: 435 GLGPEKTSFFQALSIPTKISKGTIE 509
           G+GPEKTSFFQAL IPTKI++GTIE
Sbjct: 129 GMGPEKTSFFQALQIPTKIARGTIE 153



 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 26/43 (60%), Positives = 36/43 (83%)
 Frame = +2

Query: 53  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQX*QI 181
           M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+Q  +I
Sbjct: 1   MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEI 43



 Score = 34.7 bits (76), Expect = 0.082
 Identities = 13/23 (56%), Positives = 20/23 (86%)
 Frame = +1

Query: 187 SLRGSSIVLMGKNTMMRKAIKDH 255
           ++RG + +LMGKNTM+RKA++ H
Sbjct: 46  AMRGHAEILMGKNTMIRKALRGH 68


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +3

Query: 273 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIP-AHNTGLGPE 449
           L K    +KG  G +FT     EV  +  E   +  AR G +A  +VV+P    +     
Sbjct: 90  LHKASAILKGQCGLMFTNMSKKEVEAEFSEASEEDYARVGDVATETVVLPEGPISQFAFS 149

Query: 450 KTSFFQALSIPTKISKGTI 506
                + L +PTK+ KG I
Sbjct: 150 MEPQLRKLGLPTKLDKGVI 168


>U09277-1|AAC13764.1|  532|Caenorhabditis elegans UNC-17 protein.
          Length = 532

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 278 LEGWIVVQWSLMALRIIVF 222
           + GWIV  W   AL II+F
Sbjct: 417 IAGWIVTNWGFTALNIIIF 435


>L19621-1|AAC14456.1|  532|Caenorhabditis elegans acetylcholine
           transporter protein.
          Length = 532

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 278 LEGWIVVQWSLMALRIIVF 222
           + GWIV  W   AL II+F
Sbjct: 417 IAGWIVTNWGFTALNIIIF 435


>AF036701-4|AAB88371.1|  532|Caenorhabditis elegans Uncoordinated
           protein 17, isoform a protein.
          Length = 532

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 278 LEGWIVVQWSLMALRIIVF 222
           + GWIV  W   AL II+F
Sbjct: 417 IAGWIVTNWGFTALNIIIF 435


>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +2

Query: 8   LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 121
           L+ K   S ++ +SR+ +EDK +  SN+++K  QLL E
Sbjct: 156 LLWKLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
           protein Y46B2A.3 protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 415 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 305
           TT      P  AG WT+ +N ++R  TR P    +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227


>Z50873-3|CAA90761.4|  531|Caenorhabditis elegans Hypothetical
           protein F17E5.2 protein.
          Length = 531

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 175 ADSISLRGSSIVLMGKNTMMRKAIKDHWTTIQPSRNCCH 291
           A+S SLRG SI+   +  +  K I +H  T+QP +   H
Sbjct: 5   AESPSLRGGSILENKQELIDLKNIGEHARTVQPFKTSKH 43


>AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical
           protein Y67D8B.2 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 354 LLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 503
           +L   +Q  A   A+  L+  +P   TGL P +   FQAL  P  I+  T
Sbjct: 42  VLNRYMQLEAYCDAVDDLTGALP--KTGLAPNEPDLFQALFFPRSIAPRT 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,485,639
Number of Sequences: 27780
Number of extensions: 446963
Number of successful extensions: 1312
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)