Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40099
(840 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical pr... 128 5e-30
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 31 0.77
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 30 2.4
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 30 2.4
AL132895-1|CAC14399.1| 601|Caenorhabditis elegans Hypothetical ... 29 4.1
AF039044-13|AAG24128.2| 435|Caenorhabditis elegans Hypothetical... 29 5.4
AC006673-4|AAF39930.1| 512|Caenorhabditis elegans Hypothetical ... 29 5.4
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel... 28 9.5
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell... 28 9.5
>U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical
protein C13B9.3 protein.
Length = 515
Score = 128 bits (309), Expect = 5e-30
Identities = 61/118 (51%), Positives = 83/118 (70%)
Frame = +3
Query: 192 RTAAYICRNRVRQICLPATRQLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEV 371
R ++ + VR + P +Y++L+TTK SNILEDLETLRLF RV+PEYC E E+
Sbjct: 50 RQHTFVETDSVRYVYHPLDN-IYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEI 108
Query: 372 LNQAFNLLFAFDEIVALGYRESVNLAQVRSFVEMDSHEEKIYQAVRGPKNARQRTACA 545
L F+L+FAFDE+V LGYRESVNLAQ+R+F EMDSHEE+++ ++ + + A A
Sbjct: 109 LAHDFDLIFAFDEVVTLGYRESVNLAQIRTFTEMDSHEERVFMQIKEAQEKAAKQAMA 166
Score = 83.0 bits (196), Expect = 2e-16
Identities = 43/69 (62%), Positives = 54/69 (78%), Gaps = 6/69 (8%)
Frame = +1
Query: 67 MVLIAATVCTKSGKALVSRQFV-EMTKARIEGLLAAFPKLM-----TGGRQHTFVETESV 228
MVLIAA + +K+GK LV+RQFV +M ++R+EGL+ AFPKL+ RQHTFVET+SV
Sbjct: 1 MVLIAACILSKTGKLLVARQFVNDMMRSRLEGLVDAFPKLIGNEKEAATRQHTFVETDSV 60
Query: 229 RYVYQPLDN 255
RYVY PLDN
Sbjct: 61 RYVYHPLDN 69
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 31.5 bits (68), Expect = 0.77
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = +3
Query: 255 LYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRE 434
+Y++ I+ K +N++ L L V EY L E V + + FDE++ GY +
Sbjct: 65 VYLVTISKKNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFDEMLDFGYPQ 124
Query: 435 SVNLAQVRSFV 467
+ ++ F+
Sbjct: 125 TTESKILQEFI 135
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/71 (22%), Positives = 34/71 (47%)
Frame = +3
Query: 255 LYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRE 434
+++ +T + N E L+ F+ + Y +L E V N + DEI+ GY +
Sbjct: 63 VWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQ 122
Query: 435 SVNLAQVRSFV 467
+ + +++F+
Sbjct: 123 NTDPGVLKTFI 133
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/71 (22%), Positives = 34/71 (47%)
Frame = +3
Query: 255 LYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRE 434
+++ +T + N E L+ F+ + Y +L E V N + DEI+ GY +
Sbjct: 63 VWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQ 122
Query: 435 SVNLAQVRSFV 467
+ + +++F+
Sbjct: 123 NTDPGVLKTFI 133
>AL132895-1|CAC14399.1| 601|Caenorhabditis elegans Hypothetical
protein Y59A8A.1 protein.
Length = 601
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +3
Query: 306 ETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRESVNLAQVRSFVEMDSHE 485
E +RL+SR + +YC QL + +N N + G ++V RS + D E
Sbjct: 216 EAIRLYSRGIRDYCTQLKHS--INMWINWMEVAICANDWGKLDTVTNTAYRSLKDADDAE 273
Query: 486 EKIYQAVRGP 515
+ Q+ + P
Sbjct: 274 KNSQQSQQAP 283
>AF039044-13|AAG24128.2| 435|Caenorhabditis elegans Hypothetical
protein F48G7.12 protein.
Length = 435
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 252 QLYMLLITTKASNILEDLETLRLFSR 329
Q Y ++T KA +++EDLE L+SR
Sbjct: 397 QEYQEILTEKAEHLMEDLERWHLYSR 422
>AC006673-4|AAF39930.1| 512|Caenorhabditis elegans Hypothetical
protein K09D9.12 protein.
Length = 512
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +1
Query: 535 PHARTAKGVAA*EIGGGQTWPAAALTDVLRQWLW*LDDVSSSPSESIAEKIS 690
P TAKGV + GG+ +TD L W ++ SS P ES EK S
Sbjct: 360 PPFTTAKGVFVFFVNGGEVDFRLLMTDDLGPW---DENSSSKPRESAGEKSS 408
>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans
trithorax-related protein LIN-59 protein.
Length = 1312
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = -2
Query: 689 EIFSAIDSDGDDETSSSYQSHCRXTSVSAAAGHVWPPPISHAATPLAVR 543
E F ++SD + ++ H S S+ V PPP+ L VR
Sbjct: 397 ESFEDLESDAKKSKAEQHEDHLPEASCSSRPESVIPPPVDPIQFRLKVR 445
>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
lineage protein 59 protein.
Length = 1312
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = -2
Query: 689 EIFSAIDSDGDDETSSSYQSHCRXTSVSAAAGHVWPPPISHAATPLAVR 543
E F ++SD + ++ H S S+ V PPP+ L VR
Sbjct: 397 ESFEDLESDAKKSKAEQHEDHLPEASCSSRPESVIPPPVDPIQFRLKVR 445
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,347,952
Number of Sequences: 27780
Number of extensions: 406942
Number of successful extensions: 1054
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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