Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30102
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    31   1.1  
AF043704-2|AAX88816.1|  407|Caenorhabditis elegans Prion-like-(q...    29   3.4  

>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
            protein Y45F10B.10 protein.
          Length = 1592

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -1

Query: 182  YHGSSSQL*HNAAGH*ISVVCLCSSGCASCRYSR*AETEHGSH*WSQQTPS 30
            YH +S QL     GH  +V CLCSS  +S   S   +       +SQ TP+
Sbjct: 896  YHIASEQLIGTFKGHTAAVTCLCSSNDSSLFVSTSFDKTVNVWVFSQSTPT 946


>AF043704-2|AAX88816.1|  407|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 72
           protein.
          Length = 407

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = +3

Query: 543 TDNGISAQSSGSLKKVDNIDVLAIQGQYEYSAPDGTPVKFTYTADENGYQPQSELLPVAP 722
           T  G+ A +   LKKVD+I+   +Q   E S+P+  P   T+    +  +P   + P +P
Sbjct: 116 TTEGLQADN---LKKVDDIEAAILQAVIESSSPE-PPRSSTHRQRIHRIRPGHRIRP-SP 170

Query: 723 PMP 731
           P P
Sbjct: 171 PAP 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,003,960
Number of Sequences: 27780
Number of extensions: 314743
Number of successful extensions: 747
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)