Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30101
         (807 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81097-1|CAB03175.1|  491|Caenorhabditis elegans Hypothetical pr...   125   3e-29
U96695-1|AAB57697.1|  491|Caenorhabditis elegans deoxyuridinetri...   125   3e-29
AF016438-12|AAK84532.1|  407|Caenorhabditis elegans Nuclear horm...    29   5.2  

>Z81097-1|CAB03175.1|  491|Caenorhabditis elegans Hypothetical
           protein K07A1.2 protein.
          Length = 491

 Score =  125 bits (302), Expect = 3e-29
 Identities = 59/84 (70%), Positives = 67/84 (79%)
 Frame = +1

Query: 511 YGRVAPRSGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIY 690
           YGRVAPRSGLA K+FIDVGAGVID DYRG V V+LFN  + DF VKKGDRIAQL+CE+I 
Sbjct: 403 YGRVAPRSGLAAKHFIDVGAGVIDSDYRGEVKVLLFNFGENDFEVKKGDRIAQLVCEQIA 462

Query: 691 YPVLQEVANLSVTQRGDGGFGSTG 762
                +V +L VT+RG GGFGSTG
Sbjct: 463 LCTYSKVESLEVTERGAGGFGSTG 486



 Score =  124 bits (298), Expect = 1e-28
 Identities = 60/84 (71%), Positives = 66/84 (78%)
 Frame = +1

Query: 511 YGRVAPRSGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIY 690
           YGRVAPRSGLA K+FIDVGAGVID DYRG V V+LFN +D  F VKKGDRIAQLICEKI 
Sbjct: 240 YGRVAPRSGLAAKHFIDVGAGVIDSDYRGEVKVLLFNFTDNAFEVKKGDRIAQLICEKIG 299

Query: 691 YPVLQEVANLSVTQRGDGGFGSTG 762
           + V +  + L  T RG GGFGSTG
Sbjct: 300 HCVYEAASELENTDRGAGGFGSTG 323



 Score =  118 bits (284), Expect = 5e-27
 Identities = 58/84 (69%), Positives = 65/84 (77%)
 Frame = +1

Query: 511 YGRVAPRSGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIY 690
           YGRVAPRSGLA K+FIDVGAGVID DYRG V V+LFN + T F VK GDRIA+LICE+I 
Sbjct: 84  YGRVAPRSGLAAKHFIDVGAGVIDSDYRGEVKVLLFNFNTTAFEVKTGDRIAKLICEQIG 143

Query: 691 YPVLQEVANLSVTQRGDGGFGSTG 762
               +EV +L  T RG GGFGSTG
Sbjct: 144 NGTYEEVKSLPSTNRGAGGFGSTG 167



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 31/52 (59%), Positives = 38/52 (73%)
 Frame = +2

Query: 353 LKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPG 508
           ++FT+L+ENA  P  GSE+AAG DL SA D TVPA GK  V T +Q+ELP G
Sbjct: 187 VRFTQLNENAQTPTYGSEEAAGADLYSAEDITVPAHGKCCVSTGIQMELPFG 238



 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 27/52 (51%), Positives = 35/52 (67%)
 Frame = +2

Query: 353 LKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPG 508
           ++ T+ ++NA  P  GS +AAG DL SA D TVPARGK  V T +Q+ LP G
Sbjct: 350 IQITKSNDNAQMPTYGSAEAAGADLYSAEDVTVPARGKLCVSTGIQMALPIG 401



 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 27/52 (51%), Positives = 33/52 (63%)
 Frame = +2

Query: 353 LKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPG 508
           ++FT +  +A +P  GS  +AG DL SA D  VPA GK  V T LQIELP G
Sbjct: 31  IRFTEMVGDAQKPTYGSISSAGADLYSAEDVVVPANGKLCVSTGLQIELPIG 82


>U96695-1|AAB57697.1|  491|Caenorhabditis elegans
           deoxyuridinetriphosphatase protein.
          Length = 491

 Score =  125 bits (302), Expect = 3e-29
 Identities = 59/84 (70%), Positives = 67/84 (79%)
 Frame = +1

Query: 511 YGRVAPRSGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIY 690
           YGRVAPRSGLA K+FIDVGAGVID DYRG V V+LFN  + DF VKKGDRIAQL+CE+I 
Sbjct: 403 YGRVAPRSGLAAKHFIDVGAGVIDSDYRGEVKVLLFNFGENDFEVKKGDRIAQLVCEQIA 462

Query: 691 YPVLQEVANLSVTQRGDGGFGSTG 762
                +V +L VT+RG GGFGSTG
Sbjct: 463 LCTYSKVESLEVTERGAGGFGSTG 486



 Score =  124 bits (298), Expect = 1e-28
 Identities = 60/84 (71%), Positives = 66/84 (78%)
 Frame = +1

Query: 511 YGRVAPRSGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIY 690
           YGRVAPRSGLA K+FIDVGAGVID DYRG V V+LFN +D  F VKKGDRIAQLICEKI 
Sbjct: 240 YGRVAPRSGLAAKHFIDVGAGVIDSDYRGEVKVLLFNFTDNAFEVKKGDRIAQLICEKIG 299

Query: 691 YPVLQEVANLSVTQRGDGGFGSTG 762
           + V +  + L  T RG GGFGSTG
Sbjct: 300 HCVYEAASELENTDRGAGGFGSTG 323



 Score =  118 bits (284), Expect = 5e-27
 Identities = 58/84 (69%), Positives = 65/84 (77%)
 Frame = +1

Query: 511 YGRVAPRSGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIY 690
           YGRVAPRSGLA K+FIDVGAGVID DYRG V V+LFN + T F VK GDRIA+LICE+I 
Sbjct: 84  YGRVAPRSGLAAKHFIDVGAGVIDSDYRGEVKVLLFNFNTTAFEVKTGDRIAKLICEQIG 143

Query: 691 YPVLQEVANLSVTQRGDGGFGSTG 762
               +EV +L  T RG GGFGSTG
Sbjct: 144 NGTYEEVKSLPSTNRGAGGFGSTG 167



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 31/52 (59%), Positives = 38/52 (73%)
 Frame = +2

Query: 353 LKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPG 508
           ++FT+L+ENA  P  GSE+AAG DL SA D TVPA GK  V T +Q+ELP G
Sbjct: 187 VRFTQLNENAQTPTYGSEEAAGADLYSAEDITVPAHGKCCVSTGIQMELPFG 238



 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 27/52 (51%), Positives = 35/52 (67%)
 Frame = +2

Query: 353 LKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPG 508
           ++ T+ ++NA  P  GS +AAG DL SA D TVPARGK  V T +Q+ LP G
Sbjct: 350 IQITKSNDNAQMPTYGSAEAAGADLYSAEDVTVPARGKLCVSTGIQMALPIG 401



 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 27/52 (51%), Positives = 33/52 (63%)
 Frame = +2

Query: 353 LKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPG 508
           ++FT +  +A +P  GS  +AG DL SA D  VPA GK  V T LQIELP G
Sbjct: 31  IRFTEMVGDAQKPTYGSISSAGADLYSAEDVVVPANGKLCVSTGLQIELPIG 82


>AF016438-12|AAK84532.1|  407|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 134 protein.
          Length = 407

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -2

Query: 515 P*PQAVVLFVGQFSLILCLEQEQCNHMHSL 426
           P PQ++  F+G+ +L+LC E  + +H+ +L
Sbjct: 103 PPPQSLSTFLGRPTLLLCCEPTRASHIKTL 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,887,147
Number of Sequences: 27780
Number of extensions: 281377
Number of successful extensions: 640
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)