Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30094
         (288 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68218-2|CAA92472.1|  313|Caenorhabditis elegans Hypothetical pr...    59   4e-10
U80931-5|AAB38001.1|  313|Caenorhabditis elegans Hypothetical pr...    59   4e-10
Z82059-6|CAB04874.1|  300|Caenorhabditis elegans Hypothetical pr...    58   1e-09
X76112-1|CAA53718.1|  300|Caenorhabditis elegans ADP/ATP translo...    55   9e-09
AF003141-4|AAK21485.1|  300|Caenorhabditis elegans Hypothetical ...    51   1e-07
Z49207-2|CAA89069.1|  298|Caenorhabditis elegans Hypothetical pr...    49   5e-07
U64842-4|AAB37086.2|  306|Caenorhabditis elegans Hypothetical pr...    45   8e-06
Z68882-2|CAA93110.1|  306|Caenorhabditis elegans Hypothetical pr...    42   9e-05
Z81577-1|CAB04651.3|  289|Caenorhabditis elegans Hypothetical pr...    36   0.004
Z99288-8|CAB16550.1|  231|Caenorhabditis elegans Hypothetical pr...    28   1.2  
Z92807-2|CAD21652.1|  689|Caenorhabditis elegans Hypothetical pr...    27   2.9  
Z92807-1|CAB07264.1|  747|Caenorhabditis elegans Hypothetical pr...    27   2.9  
AB039949-1|BAC06512.1|  747|Caenorhabditis elegans kinesin protein.    27   2.9  
AB017164-1|BAA32661.1|  689|Caenorhabditis elegans Kinesin like ...    27   2.9  
Z32681-3|CAD88217.1|  685|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z32681-2|CAA83607.1|  687|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U41540-2|AAK39230.1|  444|Caenorhabditis elegans Suppressor/enha...    25   8.7  
U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protei...    25   8.7  
AF173373-1|AAD51973.1|  687|Caenorhabditis elegans transmembrane...    25   8.7  
AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin SE...    25   8.7  

>Z68218-2|CAA92472.1|  313|Caenorhabditis elegans Hypothetical
           protein K01H12.2 protein.
          Length = 313

 Score = 59.3 bits (137), Expect = 4e-10
 Identities = 27/42 (64%), Positives = 30/42 (71%)
 Frame = +3

Query: 3   CWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 128
           C   I K EG SA FKGA SNV RGTGGA VL +YDEI+K +
Sbjct: 272 CAVKIIKNEGMSAMFKGALSNVFRGTGGALVLAIYDEIQKFI 313


>U80931-5|AAB38001.1|  313|Caenorhabditis elegans Hypothetical
           protein T01B11.4 protein.
          Length = 313

 Score = 59.3 bits (137), Expect = 4e-10
 Identities = 27/42 (64%), Positives = 30/42 (71%)
 Frame = +3

Query: 3   CWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 128
           C   I K EG SA FKGA SNV RGTGGA VL +YDEI+K +
Sbjct: 272 CAVKIIKNEGMSAMFKGALSNVFRGTGGALVLAIYDEIQKFI 313


>Z82059-6|CAB04874.1|  300|Caenorhabditis elegans Hypothetical
           protein T27E9.1a protein.
          Length = 300

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 27/42 (64%), Positives = 30/42 (71%)
 Frame = +3

Query: 3   CWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 128
           C   I + EG SA FKGA SNV RGTGGA VL +YDEI+K L
Sbjct: 259 CAKKIIQNEGMSAMFKGALSNVFRGTGGALVLAIYDEIQKFL 300


>X76112-1|CAA53718.1|  300|Caenorhabditis elegans ADP/ATP
           translocase protein.
          Length = 300

 Score = 54.8 bits (126), Expect = 9e-09
 Identities = 25/34 (73%), Positives = 27/34 (79%)
 Frame = +3

Query: 27  EGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 128
           EG SA FKGA SNV RGTGGA VL +YDEI+K L
Sbjct: 267 EGMSAMFKGALSNVFRGTGGALVLAIYDEIQKFL 300


>AF003141-4|AAK21485.1|  300|Caenorhabditis elegans Hypothetical
           protein W02D3.6 protein.
          Length = 300

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 22/42 (52%), Positives = 28/42 (66%)
 Frame = +3

Query: 3   CWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 128
           C   I K EG +A +KG  SNV R TGGA VL +YDEI+ ++
Sbjct: 259 CVRKIVKNEGITALYKGGLSNVFRATGGALVLTIYDEIQHLI 300


>Z49207-2|CAA89069.1|  298|Caenorhabditis elegans Hypothetical
           protein R07E3.4 protein.
          Length = 298

 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 18/42 (42%), Positives = 27/42 (64%)
 Frame = +3

Query: 3   CWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 128
           CW T+ K +G + F++GA +N LR TGGA ++  Y E  K +
Sbjct: 257 CWKTLYKKDGINGFYRGALTNSLRSTGGALIITFYYEFSKYM 298


>U64842-4|AAB37086.2|  306|Caenorhabditis elegans Hypothetical
           protein F25B4.7 protein.
          Length = 306

 Score = 45.2 bits (102), Expect = 8e-06
 Identities = 20/42 (47%), Positives = 26/42 (61%)
 Frame = +3

Query: 3   CWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 128
           C   I   EG  AFF GA  N +RGTG A VL +Y+E++K +
Sbjct: 265 CIKYIYTKEGPKAFFHGALVNAIRGTGAALVLAIYNELQKYM 306


>Z68882-2|CAA93110.1|  306|Caenorhabditis elegans Hypothetical
           protein C47E12.2 protein.
          Length = 306

 Score = 41.5 bits (93), Expect = 9e-05
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +3

Query: 15  IAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKK 122
           I   EG    +KGA +N+ R  GGA V+ LY+EI K
Sbjct: 269 IVHEEGVRGLYKGALANIFRSAGGALVMALYEEIHK 304


>Z81577-1|CAB04651.3|  289|Caenorhabditis elegans Hypothetical
           protein R11.1 protein.
          Length = 289

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +3

Query: 15  IAKTEGTSAFFKGAFSNVLR-GTGGAFVLVLYDEI 116
           + K EG  A +KG    V+R G GGA +L++YDE+
Sbjct: 247 VYKEEGFGALYKGLLPKVMRLGPGGAVMLIVYDEV 281


>Z99288-8|CAB16550.1|  231|Caenorhabditis elegans Hypothetical
          protein ZK262.9 protein.
          Length = 231

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 91 KAPPVPLRTLEKAPLKKAEVPSV 23
          KAPPVPL+  EK     A+VP++
Sbjct: 22 KAPPVPLKKEEKPVQSSAKVPTM 44


>Z92807-2|CAD21652.1|  689|Caenorhabditis elegans Hypothetical
           protein K11D9.1b protein.
          Length = 689

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 127 RTFLISSYKTSTKAPPVPLRTLEKAPLKKAEVPS 26
           RT +++       APP+   T ++AP   A VPS
Sbjct: 181 RTVVVAPAPAPVPAPPIANMTSQRAPSPVARVPS 214


>Z92807-1|CAB07264.1|  747|Caenorhabditis elegans Hypothetical
           protein K11D9.1a protein.
          Length = 747

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 127 RTFLISSYKTSTKAPPVPLRTLEKAPLKKAEVPS 26
           RT +++       APP+   T ++AP   A VPS
Sbjct: 239 RTVVVAPAPAPVPAPPIANMTSQRAPSPVARVPS 272


>AB039949-1|BAC06512.1|  747|Caenorhabditis elegans kinesin protein.
          Length = 747

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 127 RTFLISSYKTSTKAPPVPLRTLEKAPLKKAEVPS 26
           RT +++       APP+   T ++AP   A VPS
Sbjct: 239 RTVVVAPAPAPVPAPPIANMTSQRAPSPVARVPS 272


>AB017164-1|BAA32661.1|  689|Caenorhabditis elegans Kinesin like
           protein (klp-7) protein.
          Length = 689

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 127 RTFLISSYKTSTKAPPVPLRTLEKAPLKKAEVPS 26
           RT +++       APP+   T ++AP   A VPS
Sbjct: 181 RTVVVAPAPAPVPAPPIANMTSQRAPSPVARVPS 214


>Z32681-3|CAD88217.1|  685|Caenorhabditis elegans Hypothetical
           protein F56F3.2b protein.
          Length = 685

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 97  STKAPPVPLRTLEKAPLKK 41
           S + PP P+ TLE  PL K
Sbjct: 463 SQELPPAPMLTLEPVPLTK 481


>Z32681-2|CAA83607.1|  687|Caenorhabditis elegans Hypothetical
           protein F56F3.2a protein.
          Length = 687

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 97  STKAPPVPLRTLEKAPLKK 41
           S + PP P+ TLE  PL K
Sbjct: 463 SQELPPAPMLTLEPVPLTK 481


>U41540-2|AAK39230.1|  444|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein12 protein.
          Length = 444

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 192 EGSGCDTESHRNYGNN 145
           EG G D E+H  YG N
Sbjct: 9   EGGGADAETHTVYGTN 24


>U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protein
           protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 192 EGSGCDTESHRNYGNN 145
           EG G D E+H  YG N
Sbjct: 9   EGGGADAETHTVYGTN 24


>AF173373-1|AAD51973.1|  687|Caenorhabditis elegans transmembrane
           protein NDG-4 protein.
          Length = 687

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 97  STKAPPVPLRTLEKAPLKK 41
           S + PP P+ TLE  PL K
Sbjct: 463 SQELPPAPMLTLEPVPLTK 481


>AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin
           SEL-12 protein.
          Length = 444

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 192 EGSGCDTESHRNYGNN 145
           EG G D E+H  YG N
Sbjct: 9   EGGGADAETHTVYGTN 24


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,780,127
Number of Sequences: 27780
Number of extensions: 69986
Number of successful extensions: 181
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)