Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30093
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...   145   3e-35
AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3...    32   0.37 
U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4 p...    29   3.5  
U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian ...    28   8.0  
AL110490-14|CAB54448.2|   95|Caenorhabditis elegans Hypothetical...    28   8.0  
AF056576-1|AAC78598.1|   95|Caenorhabditis elegans high mobility...    28   8.0  

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score =  145 bits (352), Expect = 3e-35
 Identities = 70/91 (76%), Positives = 78/91 (85%), Gaps = 1/91 (1%)
 Frame = -2

Query: 526 PEKKQSAKEE-VQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMK 350
           P +K  AKEE   V+LGPQ   GE +FGVAHIFASFNDTFVH+TD+SGRETI RVTGGMK
Sbjct: 3   PARKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGGMK 62

Query: 349 VKADRDEASPYAAMLAAQDVAEKCKTLGITA 257
           VKADRDE+SPYAAMLAAQDVA++CK LGI A
Sbjct: 63  VKADRDESSPYAAMLAAQDVADRCKQLGINA 93



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 26/50 (52%), Positives = 27/50 (54%)
 Frame = -1

Query: 263 NGLHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 114
           N LHIKLRA           GAQ          MKIGRIEDVTP+PSD T
Sbjct: 92  NALHIKLRATGGTRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPSDCT 141


>AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3
           protein.
          Length = 689

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 626 KKVKMTDKPKRPMSAYMLWLNSARN 700
           KK K  ++PKR  +AY++W N+ RN
Sbjct: 553 KKTKDPNEPKRATTAYIIWFNANRN 577


>U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4
           protein.
          Length = 697

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 626 KKVKMTDKPKRPMSAYMLWLNSARN 700
           KK K  + PKR  SAYM W  ++RN
Sbjct: 548 KKDKDPNAPKRATSAYMQWFLASRN 572


>U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform a protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 635 KMTDKPKRPMSAYMLWLNSARNR 703
           K  D+ KRPM+A+M+W    R +
Sbjct: 55  KNDDRVKRPMNAFMVWSRGQRKK 77


>AL110490-14|CAB54448.2|   95|Caenorhabditis elegans Hypothetical
           protein Y48B6A.14 protein.
          Length = 95

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 629 KVKMTDKPKRPMSAYMLWLNSARNR 703
           K K  + PKR MSA+  W+   R R
Sbjct: 21  KAKDPNAPKRAMSAFFFWMQENRER 45


>AF056576-1|AAC78598.1|   95|Caenorhabditis elegans high mobility
           group protein 1.1 protein.
          Length = 95

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 629 KVKMTDKPKRPMSAYMLWLNSARNR 703
           K K  + PKR MSA+  W+   R R
Sbjct: 21  KAKDPNAPKRAMSAFFFWMQENRER 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,950,944
Number of Sequences: 27780
Number of extensions: 378663
Number of successful extensions: 989
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)