Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30087X
         (311 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75554-7|CAA99960.1|  297|Caenorhabditis elegans Hypothetical pr...    28   1.2  
Z70756-5|CAA94791.2|  290|Caenorhabditis elegans Hypothetical pr...    27   3.6  
AF078787-3|AAC26951.1|  335|Caenorhabditis elegans Hypothetical ...    26   4.8  

>Z75554-7|CAA99960.1|  297|Caenorhabditis elegans Hypothetical
           protein ZC455.9 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = -3

Query: 204 YHICMRVLSFI*SIFLFHHKILYITKVVSQT--NVRFY 97
           Y++ + + S++   FLFH+KIL++  ++S    + RF+
Sbjct: 65  YYVALDI-SYLSPFFLFHYKILFVVTLLSSNILSTRFF 101


>Z70756-5|CAA94791.2|  290|Caenorhabditis elegans Hypothetical
           protein T06E4.5 protein.
          Length = 290

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 94  LIKSYICL*YYFCNV*NFMMKKKYTLYERENTHA 195
           +I  +IC  YYFC      +KKKY L ++  T A
Sbjct: 198 VIAIWIC--YYFCVSKEKKLKKKYCLIKKPKTKA 229


>AF078787-3|AAC26951.1|  335|Caenorhabditis elegans Hypothetical
           protein T17A3.4 protein.
          Length = 335

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 244 DAFPPITAPSTPLLSHLHACSLVHIKYISFSS 149
           + FP +  PS PL S L     V +  ISF+S
Sbjct: 3   NGFPILRLPSKPLRSILQTMKFVELVSISFTS 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,628,343
Number of Sequences: 27780
Number of extensions: 115313
Number of successful extensions: 228
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)