Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30070
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72507-15|CAJ55245.1|  365|Caenorhabditis elegans Hypothetical p...    72   4e-13
Z72507-7|CAD56569.1|  373|Caenorhabditis elegans Hypothetical pr...    72   4e-13
Z72507-6|CAA96631.1|  398|Caenorhabditis elegans Hypothetical pr...    72   4e-13
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p...    34   0.082
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.       34   0.082
U53333-12|AAA96165.1|  387|Caenorhabditis elegans Nuclear hormon...    29   4.1  
AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical ...    29   4.1  
AC024832-3|AAF59615.1|  121|Caenorhabditis elegans Hypothetical ...    28   5.4  

>Z72507-15|CAJ55245.1|  365|Caenorhabditis elegans Hypothetical
           protein F17C11.9c protein.
          Length = 365

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 33/58 (56%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
 Frame = +2

Query: 509 ESKDPFDSMPKGTFNMDDFKRVYSNEDEA-KSIPYFWEKFDPRELFHLVCRIQIPEEL 679
           +SKDPF  MPKGTF +D+FKR YSNED A K+IP+FWE FD        C  + PE+L
Sbjct: 205 KSKDPFQDMPKGTFVLDNFKRSYSNEDTATKAIPHFWENFDADNWSIWKCEYKYPEDL 262



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 17/45 (37%), Positives = 29/45 (64%)
 Frame = +3

Query: 258 RSSLINVQRWLLTVAHQPQVSAVVGSLTLCAAPPTYDPKKYQELA 392
           R S++NV RW  TV +QP V  V+G ++L ++   ++  K+ EL+
Sbjct: 126 RKSIVNVTRWFRTVVNQPAVKEVLGEVSLASSVAQFNQAKFTELS 170



 Score = 36.7 bits (81), Expect = 0.015
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +1

Query: 7   QWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALK-VLDGH 153
           QW  +++  LLPA   +V P +    F+K+ VE+ K++L   L+ VLD +
Sbjct: 75  QWLQFAEGYLLPAVLGYVLPSVSAANFDKKTVEQYKNELNGQLQYVLDAN 124


>Z72507-7|CAD56569.1|  373|Caenorhabditis elegans Hypothetical
           protein F17C11.9b protein.
          Length = 373

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 33/58 (56%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
 Frame = +2

Query: 509 ESKDPFDSMPKGTFNMDDFKRVYSNEDEA-KSIPYFWEKFDPRELFHLVCRIQIPEEL 679
           +SKDPF  MPKGTF +D+FKR YSNED A K+IP+FWE FD        C  + PE+L
Sbjct: 213 KSKDPFQDMPKGTFVLDNFKRSYSNEDTATKAIPHFWENFDADNWSIWKCEYKYPEDL 270



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 36/80 (45%), Positives = 53/80 (66%)
 Frame = +1

Query: 7   QWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTER 186
           QW  +++  LLPA   +V P +    F+K+ VE+ K++L   L+VLD  L+ +T+LV ER
Sbjct: 50  QWLQFAEGYLLPAVLGYVLPSVSAANFDKKTVEQYKNELNGQLQVLDRVLVKKTYLVGER 109

Query: 187 ITLADVIVFSTLLHAFQHVL 246
           ++LADV V   LL AFQ+VL
Sbjct: 110 LSLADVSVALDLLPAFQYVL 129



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 17/45 (37%), Positives = 29/45 (64%)
 Frame = +3

Query: 258 RSSLINVQRWLLTVAHQPQVSAVVGSLTLCAAPPTYDPKKYQELA 392
           R S++NV RW  TV +QP V  V+G ++L ++   ++  K+ EL+
Sbjct: 134 RKSIVNVTRWFRTVVNQPAVKEVLGEVSLASSVAQFNQAKFTELS 178


>Z72507-6|CAA96631.1|  398|Caenorhabditis elegans Hypothetical
           protein F17C11.9a protein.
          Length = 398

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 33/58 (56%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
 Frame = +2

Query: 509 ESKDPFDSMPKGTFNMDDFKRVYSNEDEA-KSIPYFWEKFDPRELFHLVCRIQIPEEL 679
           +SKDPF  MPKGTF +D+FKR YSNED A K+IP+FWE FD        C  + PE+L
Sbjct: 238 KSKDPFQDMPKGTFVLDNFKRSYSNEDTATKAIPHFWENFDADNWSIWKCEYKYPEDL 295



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 36/80 (45%), Positives = 53/80 (66%)
 Frame = +1

Query: 7   QWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTER 186
           QW  +++  LLPA   +V P +    F+K+ VE+ K++L   L+VLD  L+ +T+LV ER
Sbjct: 75  QWLQFAEGYLLPAVLGYVLPSVSAANFDKKTVEQYKNELNGQLQVLDRVLVKKTYLVGER 134

Query: 187 ITLADVIVFSTLLHAFQHVL 246
           ++LADV V   LL AFQ+VL
Sbjct: 135 LSLADVSVALDLLPAFQYVL 154



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 17/45 (37%), Positives = 29/45 (64%)
 Frame = +3

Query: 258 RSSLINVQRWLLTVAHQPQVSAVVGSLTLCAAPPTYDPKKYQELA 392
           R S++NV RW  TV +QP V  V+G ++L ++   ++  K+ EL+
Sbjct: 159 RKSIVNVTRWFRTVVNQPAVKEVLGEVSLASSVAQFNQAKFTELS 203


>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
            protein 40 protein.
          Length = 1415

 Score = 34.3 bits (75), Expect = 0.082
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = -2

Query: 351  PHRA*ASRRRPTLVAGGRRSGANAERLSATNGPRV*HVLESMQQCTEDNDIGKCDSLGNK 172
            PH A +S  RPT++A G R      R +A     V ++      C+  +D G+ D    K
Sbjct: 1292 PHSAASSSSRPTIIAAGGRQ-VPVGRATAQPRVNVANIYSPFASCSASSDAGESD---KK 1347

Query: 171  EGACEKM 151
             G C +M
Sbjct: 1348 SGECMEM 1354


>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
          Length = 1415

 Score = 34.3 bits (75), Expect = 0.082
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = -2

Query: 351  PHRA*ASRRRPTLVAGGRRSGANAERLSATNGPRV*HVLESMQQCTEDNDIGKCDSLGNK 172
            PH A +S  RPT++A G R      R +A     V ++      C+  +D G+ D    K
Sbjct: 1292 PHSAASSSSRPTIIAAGGRQ-VPVGRATAQPRVNVANIYSPFASCSASSDAGESD---KK 1347

Query: 171  EGACEKM 151
             G C +M
Sbjct: 1348 SGECMEM 1354


>U53333-12|AAA96165.1|  387|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 78 protein.
          Length = 387

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 16  SWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAAL 135
           S+ ++ +L A C W   +  + + +K+NV + KS L+  L
Sbjct: 298 SFEENAILKALCCWQTAHFKLEECDKENVRKQKSLLVQCL 337


>AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical
           protein Y39A1C.2 protein.
          Length = 1066

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 285 WLLTVAHQPQVSAVVGSLTLCAAPPTYDPKKYQELA 392
           WLL V + PQV  V+  L +      Y+PK Y+++A
Sbjct: 173 WLL-VRNAPQVQTVLNGLCVKMMSLFYEPKGYEQMA 207


>AC024832-3|AAF59615.1|  121|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.2 protein.
          Length = 121

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 58  VFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTER 186
           VF  L ++ F  +N E+ KS++LAA     G     TF+ T +
Sbjct: 35  VFALLAVVAFANRNPEQMKSEMLAAGVSAAGVATISTFMETHK 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,571,275
Number of Sequences: 27780
Number of extensions: 321988
Number of successful extensions: 980
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)