Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30069
         (495 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28730-1|AAA68261.1|  113|Caenorhabditis elegans Hypothetical pr...    85   3e-17
Z99942-5|CAI79198.1|  178|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z99942-4|CAB17069.1|  541|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    29   2.4  
Z75547-13|CAO82070.1|   95|Caenorhabditis elegans Hypothetical p...    28   3.2  
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z70210-6|CAA94152.1|  184|Caenorhabditis elegans Hypothetical pr...    28   4.3  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    28   4.3  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AF056580-1|AAC78602.1|  184|Caenorhabditis elegans heterochromat...    28   4.3  
Z81097-5|CAB03168.1|  243|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe...    27   9.9  

>U28730-1|AAA68261.1|  113|Caenorhabditis elegans Hypothetical
           protein K10B2.4 protein.
          Length = 113

 Score = 85.0 bits (201), Expect = 3e-17
 Identities = 38/50 (76%), Positives = 43/50 (86%)
 Frame = +2

Query: 257 AVFCSSISFANSRVSDDTKQIVSSFMLSISAVVMSYLQNPAPMTPPWAAL 406
           A+ CS ISFAN+R SDD KQIVSSFMLS+SAVVMSYLQNP+P+ PPW  L
Sbjct: 61  ALVCSCISFANTRTSDDAKQIVSSFMLSVSAVVMSYLQNPSPIIPPWVTL 110



 Score = 73.7 bits (173), Expect = 7e-14
 Identities = 33/59 (55%), Positives = 43/59 (72%), Gaps = 4/59 (6%)
 Frame = +3

Query: 90  MQLSADPRRADRERRYKPPPPTS----APAEDLTTDYMNILGMVFSMCGLMMRLKWCAW 254
           MQ + DPRR +R  RYKP   T+    A +ED   +YMN+LGM+FSMCGLM+R+KWC+W
Sbjct: 1   MQQNGDPRRTNRIVRYKPLDSTANQQQAISEDPLPEYMNVLGMIFSMCGLMIRMKWCSW 59


>Z99942-5|CAI79198.1|  178|Caenorhabditis elegans Hypothetical
           protein H13N06.4b protein.
          Length = 178

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -1

Query: 444 NRNYMFILYYHVVRAAQGGVIGAGF*RYDITTAEMDNMKELTICLVSSETLEFAK 280
           N N+ +  Y ++  AA  GV+G    ++ + TA++D+ K+ T+     E L+  K
Sbjct: 32  NENHSYYKYAYIGGAATAGVLGF---KHFVKTAKLDHAKDETMSEKKLENLQIYK 83


>Z99942-4|CAB17069.1|  541|Caenorhabditis elegans Hypothetical
           protein H13N06.4a protein.
          Length = 541

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -1

Query: 444 NRNYMFILYYHVVRAAQGGVIGAGF*RYDITTAEMDNMKELTICLVSSETLEFAK 280
           N N+ +  Y ++  AA  GV+G    ++ + TA++D+ K+ T+     E L+  K
Sbjct: 32  NENHSYYKYAYIGGAATAGVLGF---KHFVKTAKLDHAKDETMSEKKLENLQIYK 83


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
            protein Y66D12A.14 protein.
          Length = 2870

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -1

Query: 363  YDITTAEMDN-MKELTICLVSSETLEFAKLMLEQNTAATRTISISSLSHTLKIPSLKYSY 187
            Y  T    DN + E+++ + S  TL +  L  +      ++I    ++H L  PSL  S+
Sbjct: 2300 YQFTNFVFDNSVLEVSMSIASQGTLVYGPLCFDP-ADFEKSIETEGITHCLLFPSLVQSF 2358

Query: 186  NL 181
            N+
Sbjct: 2359 NI 2360


>Z75547-13|CAO82070.1|   95|Caenorhabditis elegans Hypothetical
           protein R11D1.13 protein.
          Length = 95

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/50 (26%), Positives = 30/50 (60%)
 Frame = -1

Query: 324 LTICLVSSETLEFAKLMLEQNTAATRTISISSLSHTLKIPSLKYSYNLWL 175
           LT C +S ET++  + ++++++A  +  + +  +   +I SLK   +L+L
Sbjct: 25  LTKCGISKETIDGVQSVIDEHSAMIKIANSNKRAKKTEIDSLKADIDLYL 74


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
            K10C2.1 protein.
          Length = 2314

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 105  DPRRADRERRYKPPPPTSAPAEDLTTDYMNILGMVFS 215
            D  R   ER   PPPPT   A+D  T   N+ G+ F+
Sbjct: 1111 DTVRQPTERDAPPPPPTQTKAQDEVT---NLPGLTFT 1144


>Z70210-6|CAA94152.1|  184|Caenorhabditis elegans Hypothetical
           protein K08H2.6 protein.
          Length = 184

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 111 RRADRERRYKPPPPTSAPAE 170
           +R  R+RRY P P TS+ AE
Sbjct: 89  KRTTRKRRYSPQPSTSSSAE 108


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 269 SSISFANSRVSDDTKQIVSSFMLSISAVVMSYLQNPAPMT 388
           +S SF  +R  D  K  +SS     S +VMSY   P+P T
Sbjct: 69  TSCSFDANR--DQLKNFLSSSAADTSFIVMSYSDKPSPST 106


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 269 SSISFANSRVSDDTKQIVSSFMLSISAVVMSYLQNPAPMT 388
           +S SF  +R  D  K  +SS     S +VMSY   P+P T
Sbjct: 69  TSCSFDANR--DQLKNFLSSSAADTSFIVMSYSDKPSPST 106


>AF056580-1|AAC78602.1|  184|Caenorhabditis elegans heterochromatin
           protein 1 homolog protein.
          Length = 184

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 111 RRADRERRYKPPPPTSAPAE 170
           +R  R+RRY P P TS+ AE
Sbjct: 89  KRTTRKRRYSPQPSTSSSAE 108


>Z81097-5|CAB03168.1|  243|Caenorhabditis elegans Hypothetical
           protein K07A1.7 protein.
          Length = 243

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 436 LYVYSILSCSKSCPRWCHWCR 374
           LY Y I+S  + CP  C  CR
Sbjct: 181 LYYYDIVSSGRCCPVVCQSCR 201


>AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform a protein.
          Length = 691

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 198 KYSYNLWLGLLLEQKWVEVVYSDVLCQRDVDL 103
           K    L LG   +QK  + +YSD+ C+++VD+
Sbjct: 29  KTCITLSLGTCKQQKKKKNLYSDLACRKNVDI 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,996,125
Number of Sequences: 27780
Number of extensions: 223823
Number of successful extensions: 921
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)