Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30060
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...   190   5e-49
U40415-6|AAP68933.1|  329|Caenorhabditis elegans Homolog of yeas...    29   3.3  
AC093703-2|AAL77187.3|  473|Caenorhabditis elegans Hypothetical ...    27   7.6  

>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score =  190 bits (464), Expect = 5e-49
 Identities = 96/171 (56%), Positives = 118/171 (69%)
 Frame = +1

Query: 1   IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
           IDINHKHDR  RRT  KS++                T  KFN IVL+RL MSR NR P+S
Sbjct: 3   IDINHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPLS 62

Query: 181 VSRLARHMKKTNS*GFDCRGSGDSQNDVRLYKIPKMTVAALHVTEKARARILAAGGEILT 360
           +++LAR ++K  +            +D RLY +PK++VAALHVTE ARARILAAGGEI+T
Sbjct: 63  LAKLARAVQKAGNENKTVVTLSTVTDDARLYTVPKISVAALHVTEGARARILAAGGEIIT 122

Query: 361 FDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGLK 513
            DQLAL++P G+ TV +QG R+AREA +HFGPAPG P SHTKPYVR+KG K
Sbjct: 123 LDQLALKSPKGENTVFLQGPRSAREAEKHFGPAPGVPHSHTKPYVRSKGRK 173


>U40415-6|AAP68933.1|  329|Caenorhabditis elegans Homolog of yeast
           longevity geneprotein 2 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +2

Query: 293 WLLFMLPKKLVHAFWLLEEKFLLLISWLFVLRLARRQYWYKVSEMLVRQCVTLALL 460
           W    +P  +   +W+    ++ L+  +  L   R  +W    +MLV   +TLAL+
Sbjct: 125 WPFHPIPNAVAWYYWIQGGFYIALVFGILFLDAKRSDFW----QMLVHHFITLALI 176


>AC093703-2|AAL77187.3|  473|Caenorhabditis elegans Hypothetical
           protein Y20F4.2 protein.
          Length = 473

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 409 VQGQRNAREAVRHFGPAPGAPRSHTKPY-VRTKGLKK 516
           +QG R+        G A G+P  H  PY +R+ GL +
Sbjct: 104 IQGHRSRSPEDHMIGSASGSPSHHYHPYGMRSNGLSR 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,924,796
Number of Sequences: 27780
Number of extensions: 312347
Number of successful extensions: 857
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)