Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30054
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr...    34   0.089
AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP ...    34   0.089
U12964-7|AAA91218.2|  356|Caenorhabditis elegans Rhomboid (droso...    31   0.83 
U00037-1|AAA50661.2|  495|Caenorhabditis elegans Adenosine deami...    30   1.5  
AF051275-1|AAC25097.1|  495|Caenorhabditis elegans putative RNA ...    30   1.5  
Z92812-9|CAM84813.1|  338|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF026203-1|AAB71246.2|  506|Caenorhabditis elegans Hypothetical ...    29   4.4  
U64859-7|AAC69095.1|  344|Caenorhabditis elegans Serpentine rece...    24   9.0  

>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical
           protein ZK512.3 protein.
          Length = 1418

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 327 FYSNPQKSYDYFSEVLQLIHGF-VVRLNFHFNIKKIIYYEC 446
           F ++P K+Y    + ++  +GF + +L FH N ++II +EC
Sbjct: 559 FSTSPAKAYQLLCQPMEYFYGFNMTQLAFHCNAREIIAHEC 599


>AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP
           homologous cationchannel protein protein.
          Length = 1027

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 327 FYSNPQKSYDYFSEVLQLIHGF-VVRLNFHFNIKKIIYYEC 446
           F ++P K+Y    + ++  +GF + +L FH N ++II +EC
Sbjct: 168 FSTSPAKAYQLLCQPMEYFYGFNMTQLAFHCNAREIIAHEC 208


>U12964-7|AAA91218.2|  356|Caenorhabditis elegans Rhomboid
           (drosophila) related protein1 protein.
          Length = 356

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
 Frame = +3

Query: 183 NSALRCCDMGMISLDLKHIYVVVKVKNILS---VCCLVMRMFLILL---VLNDRFYSNPQ 344
           NS L     G+ +L   H+  V+   + +    +  LV+ +F+ L     ++ RFY+N  
Sbjct: 226 NSLLVGASAGVYALIFAHVANVILNWHEMPLRWIRVLVLFVFIFLDFGGAIHRRFYTNDC 285

Query: 345 KSYDYFSE----VLQLIHGFVVRLNF-HFNIKKIIYYECLFL 455
            S  + +     V  L  G+VV  N     I+KII Y CLFL
Sbjct: 286 DSVSHLAHIAGAVTGLFFGYVVLYNVVEHRIEKIIRYVCLFL 327


>U00037-1|AAA50661.2|  495|Caenorhabditis elegans Adenosine
           deaminase that acts onrna protein 2 protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 126 LCVIIFGGKVLDGLIARSDNSALRCCDMGMISLDLKHI--YVVVKVK 260
           +CV+I  G+ ++G +      A   C +  + + LKH+  YVV  VK
Sbjct: 70  ICVVILNGERIEGNVKSKKKEAKVSCSLKGLEVVLKHVSEYVVPAVK 116


>AF051275-1|AAC25097.1|  495|Caenorhabditis elegans putative RNA
           adenosine deaminase protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 126 LCVIIFGGKVLDGLIARSDNSALRCCDMGMISLDLKHI--YVVVKVK 260
           +CV+I  G+ ++G +      A   C +  + + LKH+  YVV  VK
Sbjct: 70  ICVVILNGERIEGNVKSKKKEAKVSCSLKGLEVVLKHVSEYVVPAVK 116


>Z92812-9|CAM84813.1|  338|Caenorhabditis elegans Hypothetical
           protein T03E6.9 protein.
          Length = 338

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/78 (19%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +3

Query: 231 KHIYVVVKVKNILSVCCLVMRMFLI-LLVLNDRFYSNPQKSYDYFSEVLQLIHGFVVRLN 407
           K + +++K   + ++  L++ + ++  L +   FY+  Q +Y+YF   + L     +  +
Sbjct: 138 KPVKILIKFYKLCTILMLIVAISILPALTIQLDFYNFRQSAYEYFKNPMVLCDDMFIADH 197

Query: 408 FHFNIKKIIYYECLFLKW 461
            H+ I    +   +F  W
Sbjct: 198 RHWKIYVPYFCSLIFGAW 215


>AF026203-1|AAB71246.2|  506|Caenorhabditis elegans Hypothetical
           protein E03E2.1 protein.
          Length = 506

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 318 LIPIILKTYALLDNIQIIYF*P*QLHKCALN 226
           L+P+ + TY  L N ++ Y     LHKC LN
Sbjct: 6   LLPVAIFTYVFLRNFKLYY----TLHKCGLN 32


>U64859-7|AAC69095.1|  344|Caenorhabditis elegans Serpentine
           receptor, class h protein11 protein.
          Length = 344

 Score = 23.8 bits (49), Expect(2) = 9.0
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -3

Query: 627 LIRKQQLLYNFLQLLH---ATTSYLYKISI 547
           L+R Q LLY FL ++H   A T+  Y I +
Sbjct: 133 LLRFQVLLYRFLIIIHPIVAITTINYSIGV 162



 Score = 22.2 bits (45), Expect(2) = 9.0
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 564 LYKISIRIYILKSN-VIQ*ILNFTRLCQFCNIYTFTILKINI 442
           +Y I + + +  S+ V+  ILNF + CQ  +  T  + K+ I
Sbjct: 202 IYGIQVILQLTVSSCVLFYILNFVKTCQGMSTATIKLQKMMI 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,725,559
Number of Sequences: 27780
Number of extensions: 290488
Number of successful extensions: 734
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)