Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30046
(762 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 156 1e-38
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 156 1e-38
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 156 1e-38
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 112 3e-25
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 89 2e-18
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 81 8e-16
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 81 8e-16
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 39 0.003
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 39 0.003
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 39 0.004
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 37 0.014
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 37 0.014
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 37 0.014
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.17
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 30 1.6
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 29 4.8
U39472-11|AAP86619.2| 355|Caenorhabditis elegans Serpentine rec... 28 6.3
Z99710-12|CAI79158.1| 333|Caenorhabditis elegans Hypothetical p... 28 8.3
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 28 8.3
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 28 8.3
AL034393-28|CAI79175.1| 333|Caenorhabditis elegans Hypothetical... 28 8.3
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 156 bits (379), Expect = 1e-38
Identities = 69/98 (70%), Positives = 80/98 (81%)
Frame = +3
Query: 228 PSCCRFRAHSGWHGDNMLEPSTKMPWFKAWQVERKEGKADGKCLIEALDAILPPARPTDK 407
P F SG++GDNMLE S+ MPWFK W VERKEG A GK L+EALD+I+PP RPTD+
Sbjct: 151 PKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDR 210
Query: 408 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVSLPP 521
PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V+ P
Sbjct: 211 PLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAP 248
Score = 142 bits (344), Expect = 2e-34
Identities = 65/83 (78%), Positives = 72/83 (86%)
Frame = +2
Query: 512 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAAD 691
FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A
Sbjct: 246 FAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEART 305
Query: 692 FTAQVIVLNHPGQISNGYTPVLD 760
F AQVI++NHPGQISNGYTPVLD
Sbjct: 306 FHAQVIIMNHPGQISNGYTPVLD 328
Score = 74.9 bits (176), Expect(2) = 3e-14
Identities = 34/46 (73%), Positives = 37/46 (80%)
Frame = +1
Query: 118 LIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPI 255
L+V NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPI
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPI 159
Score = 21.0 bits (42), Expect(2) = 3e-14
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1
Query: 1 ADCAVLIVA 27
ADCAVL+VA
Sbjct: 109 ADCAVLVVA 117
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 156 bits (379), Expect = 1e-38
Identities = 69/98 (70%), Positives = 80/98 (81%)
Frame = +3
Query: 228 PSCCRFRAHSGWHGDNMLEPSTKMPWFKAWQVERKEGKADGKCLIEALDAILPPARPTDK 407
P F SG++GDNMLE S+ MPWFK W VERKEG A GK L+EALD+I+PP RPTD+
Sbjct: 185 PKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDR 244
Query: 408 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVSLPP 521
PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V+ P
Sbjct: 245 PLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAP 282
Score = 147 bits (357), Expect = 6e-36
Identities = 71/85 (83%), Positives = 74/85 (87%)
Frame = +1
Query: 1 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 180
ADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE RF
Sbjct: 109 ADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFT 168
Query: 181 EIKKEVSSYIKKIGYNPAAVAFVPI 255
EI EVS +IKKIGYNP AV FVPI
Sbjct: 169 EITNEVSGFIKKIGYNPKAVPFVPI 193
Score = 142 bits (344), Expect = 2e-34
Identities = 65/83 (78%), Positives = 72/83 (86%)
Frame = +2
Query: 512 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAAD 691
FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A
Sbjct: 280 FAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEART 339
Query: 692 FTAQVIVLNHPGQISNGYTPVLD 760
F AQVI++NHPGQISNGYTPVLD
Sbjct: 340 FHAQVIIMNHPGQISNGYTPVLD 362
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 156 bits (379), Expect = 1e-38
Identities = 69/98 (70%), Positives = 80/98 (81%)
Frame = +3
Query: 228 PSCCRFRAHSGWHGDNMLEPSTKMPWFKAWQVERKEGKADGKCLIEALDAILPPARPTDK 407
P F SG++GDNMLE S+ MPWFK W VERKEG A GK L+EALD+I+PP RPTD+
Sbjct: 185 PKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDR 244
Query: 408 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVSLPP 521
PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V+ P
Sbjct: 245 PLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAP 282
Score = 147 bits (357), Expect = 6e-36
Identities = 71/85 (83%), Positives = 74/85 (87%)
Frame = +1
Query: 1 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 180
ADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE RF
Sbjct: 109 ADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFT 168
Query: 181 EIKKEVSSYIKKIGYNPAAVAFVPI 255
EI EVS +IKKIGYNP AV FVPI
Sbjct: 169 EITNEVSGFIKKIGYNPKAVPFVPI 193
Score = 142 bits (344), Expect = 2e-34
Identities = 65/83 (78%), Positives = 72/83 (86%)
Frame = +2
Query: 512 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAAD 691
FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A
Sbjct: 280 FAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEART 339
Query: 692 FTAQVIVLNHPGQISNGYTPVLD 760
F AQVI++NHPGQISNGYTPVLD
Sbjct: 340 FHAQVIIMNHPGQISNGYTPVLD 362
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 112 bits (269), Expect = 3e-25
Identities = 75/160 (46%), Positives = 88/160 (55%)
Frame = +1
Query: 1 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 180
ADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQL V+ T P S R +
Sbjct: 109 ADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSPDSSRRSD 165
Query: 181 EIKKEVSSYIKKIGYNPAAVAFVPILDGTETTCWSLQPKCLGSRHGRWSVRKAKLTENAS 360
I++ + + +P D TETTC C GSR G + RK L E S
Sbjct: 166 TIQR-----LFHLSQSP---------DSTETTCLRSPRTCHGSRDGLLNARKETLPERPS 211
Query: 361 LKLSMPSCHLPAPLTSPCVFPCKTYTKSVVLVPCPSAELK 480
+L PS H A LT VF + T+S L P S L+
Sbjct: 212 SRLLTPSSHHNAQLTDHSVFHSRMCTRSEELEPSQSDVLR 251
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 89.4 bits (212), Expect = 2e-18
Identities = 39/85 (45%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 180
AD AVL+++A GEFE G + GQTREH++L T GVK L++ VNKMD + E RF+
Sbjct: 211 ADLAVLVISARRGEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFK 270
Query: 181 EIKKEVSSYIKKIGYNPAA-VAFVP 252
EI+ +++ +++K+G+NP + +VP
Sbjct: 271 EIEGKLTPFLRKLGFNPKTDITYVP 295
Score = 44.8 bits (101), Expect = 7e-05
Identities = 27/91 (29%), Positives = 44/91 (48%)
Frame = +2
Query: 485 CVETRYHCVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 664
CV+ V P +V + + V GDN+ F +K + EL+ G++ S
Sbjct: 363 CVQKGDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKGIEENELQGGFII-CSP 421
Query: 665 NNPPKGAADFTAQVIVLNHPGQISNGYTPVL 757
++ K F A+V+VL H I++GY+ VL
Sbjct: 422 DSLAKTGRVFDAEVLVLEHRSIIASGYSCVL 452
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +3
Query: 348 GKCLIEALDAILPP-ARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG-TIVSLPP 521
G C IE +D +LP R + P+R + + Y +GTV +G++E+G ++ G T+V +P
Sbjct: 318 GPCFIEFIDVLLPSYKRDFNGPVRCTVAEKYS--EMGTVIIGKMESGCVQKGDTLVVMPN 375
Query: 522 PTSLLKSNLW 551
+ +W
Sbjct: 376 KQPVQVLQIW 385
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 81.0 bits (191), Expect = 8e-16
Identities = 42/86 (48%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 180
AD A+L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+
Sbjct: 272 ADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFD 329
Query: 181 EIKKEVSSYI-KKIGYNPAAVAFVPI 255
EIK +S ++ ++ G++ FVP+
Sbjct: 330 EIKNNLSVFLTRQAGFSKP--KFVPV 353
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +3
Query: 345 DGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETG 485
DG CL+E +D+ + P P+D PLR+ + DV K+ V G++E+G
Sbjct: 371 DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESG 417
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 81.0 bits (191), Expect = 8e-16
Identities = 42/86 (48%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 180
AD A+L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+
Sbjct: 290 ADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFD 347
Query: 181 EIKKEVSSYI-KKIGYNPAAVAFVPI 255
EIK +S ++ ++ G++ FVP+
Sbjct: 348 EIKNNLSVFLTRQAGFSKP--KFVPV 371
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +3
Query: 345 DGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETG 485
DG CL+E +D+ + P P+D PLR+ + DV K+ V G++E+G
Sbjct: 389 DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESG 435
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 39.1 bits (87), Expect = 0.003
Identities = 28/88 (31%), Positives = 44/88 (50%)
Frame = +1
Query: 4 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEE 183
D AVL++AA G E QT+EH +LA +GVK + + +NK D E E +
Sbjct: 133 DVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDL 181
Query: 184 IKKEVSSYIKKIGYNPAAVAFVPILDGT 267
++ E + G+N A P++ G+
Sbjct: 182 VEMEARELLSLHGFNGDA---TPVIRGS 206
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/53 (41%), Positives = 29/53 (54%)
Frame = +3
Query: 357 LIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVSL 515
LI+ALD++ P R +P+ I G GTV VG +E GVLK G V +
Sbjct: 222 LIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEI 274
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 39.1 bits (87), Expect = 0.003
Identities = 28/88 (31%), Positives = 44/88 (50%)
Frame = +1
Query: 4 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEE 183
D AVL++AA G E QT+EH +LA +GVK + + +NK D E E +
Sbjct: 133 DVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDL 181
Query: 184 IKKEVSSYIKKIGYNPAAVAFVPILDGT 267
++ E + G+N A P++ G+
Sbjct: 182 VEMEARELLSLHGFNGDA---TPVIRGS 206
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/53 (41%), Positives = 29/53 (54%)
Frame = +3
Query: 357 LIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVSL 515
LI+ALD++ P R +P+ I G GTV VG +E GVLK G V +
Sbjct: 222 LIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEI 274
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/73 (28%), Positives = 35/73 (47%)
Frame = +2
Query: 539 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 718
+KS+ + G + F +K + K++R+G V D K P F A+++VL+
Sbjct: 420 IKSIHRKRMPVGIVKCGQSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLH 478
Query: 719 HPGQISNGYTPVL 757
HP I Y +L
Sbjct: 479 HPTTIKPNYQAML 491
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 408 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVSLPPPTS 530
P + D+Y + G+GT+ G + +G ++ I+ L P ++
Sbjct: 372 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSN 412
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 37.1 bits (82), Expect = 0.014
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +3
Query: 336 GKADGKCLIEALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIV 509
G+ K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G +
Sbjct: 226 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKI 284
Query: 510 SL 515
+
Sbjct: 285 EI 286
Score = 35.5 bits (78), Expect = 0.041
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = +1
Query: 10 AVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEE 183
A+L+VAA G QTREH LLA +GV ++V +NK+D E P +E R E
Sbjct: 139 AILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-EL 188
Query: 184 IKKEVSSYIKKIGY 225
++ ++ + + GY
Sbjct: 189 VEMDIREQLNEFGY 202
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +2
Query: 527 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 649
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 296 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 37.1 bits (82), Expect = 0.014
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +3
Query: 336 GKADGKCLIEALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIV 509
G+ K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G +
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKI 285
Query: 510 SL 515
+
Sbjct: 286 EI 287
Score = 35.5 bits (78), Expect = 0.041
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = +1
Query: 10 AVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEE 183
A+L+VAA G QTREH LLA +GV ++V +NK+D E P +E R E
Sbjct: 140 AILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-EL 189
Query: 184 IKKEVSSYIKKIGY 225
++ ++ + + GY
Sbjct: 190 VEMDIREQLNEFGY 203
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +2
Query: 527 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 649
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 37.1 bits (82), Expect = 0.014
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +3
Query: 336 GKADGKCLIEALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIV 509
G+ K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G +
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKI 285
Query: 510 SL 515
+
Sbjct: 286 EI 287
Score = 35.5 bits (78), Expect = 0.041
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = +1
Query: 10 AVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEE 183
A+L+VAA G QTREH LLA +GV ++V +NK+D E P +E R E
Sbjct: 140 AILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-EL 189
Query: 184 IKKEVSSYIKKIGY 225
++ ++ + + GY
Sbjct: 190 VEMDIREQLNEFGY 203
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +2
Query: 527 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 649
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2
Query: 137 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 9
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 408 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVSLPPPTS 530
P + D+Y + G+GT+ G + +G ++ I+ L P ++
Sbjct: 373 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSN 413
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +2
Query: 539 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 718
V S+ +A+ PG+ ++ LRRG V + + PP +FTA +++L
Sbjct: 450 VGSIRRSRQAVGCVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLC 508
Query: 719 H 721
H
Sbjct: 509 H 509
>U39472-11|AAP86619.2| 355|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 34 protein.
Length = 355
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/65 (26%), Positives = 24/65 (36%)
Frame = +2
Query: 482 WCVETRYHCVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDS 661
WC Y C+F P I T K + + + +N N K+ K L R + G
Sbjct: 280 WCYTYTYACMFLPIIILTSTKIISLQRREKINGLTKENQNENQKSYFDK-LDRSWSQGYG 338
Query: 662 KNNPP 676
P
Sbjct: 339 NRYAP 343
>Z99710-12|CAI79158.1| 333|Caenorhabditis elegans Hypothetical
protein Y18D10A.22 protein.
Length = 333
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/54 (22%), Positives = 30/54 (55%)
Frame = +2
Query: 488 VETRYHCVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 649
+ T C+ + +NI ++ + H+ + +++ GD G +K +++RRG++
Sbjct: 212 LHTAARCIGSISNILSQFQ----HYHRIYQSLCGDQAGILLKKNQKRQVRRGWI 261
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 70 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP-AAVAF 246
QT EH LLA ++I+ +NK D E + + E K+V +K +G + + +
Sbjct: 112 QTAEHLLLASKFCPNRVIIVLNKCDLAE----KSKISESAKKVRKGLKSMGVDENSPIVE 167
Query: 247 VPILDG 264
+ + DG
Sbjct: 168 MSLADG 173
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 378 ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVSLP 518
I P R + + + + I G GTV G V GVL+ T + P
Sbjct: 191 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFP 237
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 378 ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVSLP 518
I P R + + + + I G GTV G V GVL+ T + P
Sbjct: 150 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFP 196
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -1
Query: 705 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTAS 574
T A +AAP GGLF + T P T F T +P TA+
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAA 511
>AL034393-28|CAI79175.1| 333|Caenorhabditis elegans Hypothetical
protein Y18D10A.22 protein.
Length = 333
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/54 (22%), Positives = 30/54 (55%)
Frame = +2
Query: 488 VETRYHCVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 649
+ T C+ + +NI ++ + H+ + +++ GD G +K +++RRG++
Sbjct: 212 LHTAARCIGSISNILSQFQ----HYHRIYQSLCGDQAGILLKKNQKRQVRRGWI 261
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,149,770
Number of Sequences: 27780
Number of extensions: 479312
Number of successful extensions: 1471
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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