Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30039
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.    30   1.6  
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.    30   1.6  
AF016445-2|AAC69064.1|  376|Caenorhabditis elegans Serpentine re...    28   4.9  
AC024756-10|AAK29882.2|  326|Caenorhabditis elegans Hypothetical...    28   4.9  
Z66561-7|CAB54206.2|  419|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium chann...    27   8.6  
AF304127-1|AAG50240.1|  419|Caenorhabditis elegans innexin protein.    27   8.6  

>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
           protein C12C8.3b protein.
          Length = 1143

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 330 ANIYMSVGLPTPVAGSLMMKIFVGVRNNNVNFECPAKERVQLVLYNFSGM 479
           + +Y+S  LP+P  G+LM        NN++N   P   + +   ++ SGM
Sbjct: 166 SQMYLSPTLPSPPRGALMSDCSTPTMNNHINSSTPL-HQPRAFSFSLSGM 214


>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
           protein C12C8.3a protein.
          Length = 1147

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 330 ANIYMSVGLPTPVAGSLMMKIFVGVRNNNVNFECPAKERVQLVLYNFSGM 479
           + +Y+S  LP+P  G+LM        NN++N   P   + +   ++ SGM
Sbjct: 166 SQMYLSPTLPSPPRGALMSDCSTPTMNNHINSSTPL-HQPRAFSFSLSGM 214


>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
          Length = 1147

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 330 ANIYMSVGLPTPVAGSLMMKIFVGVRNNNVNFECPAKERVQLVLYNFSGM 479
           + +Y+S  LP+P  G+LM        NN++N   P   + +   ++ SGM
Sbjct: 166 SQMYLSPTLPSPPRGALMSDCSTPTMNNHINSSTPL-HQPRAFSFSLSGM 214


>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
          Length = 1143

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 330 ANIYMSVGLPTPVAGSLMMKIFVGVRNNNVNFECPAKERVQLVLYNFSGM 479
           + +Y+S  LP+P  G+LM        NN++N   P   + +   ++ SGM
Sbjct: 166 SQMYLSPTLPSPPRGALMSDCSTPTMNNHINSSTPL-HQPRAFSFSLSGM 214


>AF016445-2|AAC69064.1|  376|Caenorhabditis elegans Serpentine
           receptor, class w protein134 protein.
          Length = 376

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 473 RYVNLFNKRKYTLLLICILNYIISLNFKKCYWWIV 577
           RY   FN   Y L+ + +L Y+++   ++C  W++
Sbjct: 98  RYSKCFNTMSYHLVSVDLLLYLVNQYARRCSTWLL 132


>AC024756-10|AAK29882.2|  326|Caenorhabditis elegans Hypothetical
           protein Y34D9A.2 protein.
          Length = 326

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 108 AITNCCRHHLHLLSFVNDHYVTLFILSSTQ 197
           A+ N C   +HLL+F   HY  LF L+ T+
Sbjct: 115 AMMNLCIAGVHLLTFARIHYEQLFGLTPTK 144


>Z66561-7|CAB54206.2|  419|Caenorhabditis elegans Hypothetical
           protein F08G12.10 protein.
          Length = 419

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 482 NLFNKRKYTLLLICILNYIISLNFKKCYWWIVECFV 589
           NL  + ++T+  I ILN II   +   Y+W++  FV
Sbjct: 248 NLGQQHQHTVSCIMILNMIIEKLYICFYFWLIFVFV 283


>U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 2 protein.
          Length = 675

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 176 IYPLFHTIVLFSILIYKSTVVFM 244
           +Y LFHT+ L  ILI  +T++ +
Sbjct: 160 LYYLFHTVTLIDILIIPATILLL 182


>AF304127-1|AAG50240.1|  419|Caenorhabditis elegans innexin protein.
          Length = 419

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 482 NLFNKRKYTLLLICILNYIISLNFKKCYWWIVECFV 589
           NL  + ++T+  I ILN II   +   Y+W++  FV
Sbjct: 248 NLGQQHQHTVSCIMILNMIIEKLYICFYFWLIFVFV 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,369,372
Number of Sequences: 27780
Number of extensions: 336981
Number of successful extensions: 681
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)