Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30032
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024847-3|AAF60854.1|  195|Caenorhabditis elegans Hypothetical ...    46   3e-05
AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical ...    46   3e-05
Z81454-2|CAB03804.2|  346|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AC024775-4|AAK68453.4|   88|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF022975-1|AAB70675.3|  587|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z50016-2|CAC42346.1|  487|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF151640-1|AAD42382.1|  487|Caenorhabditis elegans ionotropic GA...    29   4.6  
AF022975-3|AAB70674.1|  548|Caenorhabditis elegans Hypothetical ...    28   8.0  

>AC024847-3|AAF60854.1|  195|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.5a protein.
          Length = 195

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 22/32 (68%), Positives = 26/32 (81%)
 Frame = +1

Query: 1   VMSQANVSRAKAVRALKNNQSDIVNAIMELTM 96
           V+SQAN +R KA+RALK   +DIVNAIM LTM
Sbjct: 164 VISQANTTRNKAIRALKEADNDIVNAIMSLTM 195


>AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.5b protein.
          Length = 197

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 22/32 (68%), Positives = 26/32 (81%)
 Frame = +1

Query: 1   VMSQANVSRAKAVRALKNNQSDIVNAIMELTM 96
           V+SQAN +R KA+RALK   +DIVNAIM LTM
Sbjct: 166 VISQANTTRNKAIRALKEADNDIVNAIMSLTM 197


>Z81454-2|CAB03804.2|  346|Caenorhabditis elegans Hypothetical
           protein B0391.4 protein.
          Length = 346

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/68 (23%), Positives = 30/68 (44%)
 Frame = -3

Query: 701 LFFI*FYLSNYCMLFDNLLPTKKRKIGHSPIKTITSTTRGVYLVVNTLPYPSFIGLKKKF 522
           L F+  ++S  C+LF N    +K    +  + +  +    ++  V  + YP+    K  F
Sbjct: 18  LGFVTTFMSGLCLLFLNYFGAQKNFGSYKYLISAFTMLGMIFATVEIIVYPNVHNYKASF 77

Query: 521 IFQQFSVS 498
           +F  F  S
Sbjct: 78  LFYSFEES 85


>AC024775-4|AAK68453.4|   88|Caenorhabditis elegans Hypothetical
           protein Y41D4A.3 protein.
          Length = 88

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = -2

Query: 603 HHINH*GSVSSC*YVALSQFHRFKKKVHFST-IFRFRFVNLKYNKTSFLNDSQIFSVI 433
           HHIN    VS   ++ +  FH     VH S     F  + L +    F+N  QI  +I
Sbjct: 25  HHINTRSDVSHAIWITMFYFHTAYPSVHKSNRSDDFPIIELFFQTLPFINYLQIIQII 82


>AF022975-1|AAB70675.3|  587|Caenorhabditis elegans Hypothetical
           protein K09C6.7 protein.
          Length = 587

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -2

Query: 627 NRPFTYKNHHINH*GSVSSC*YVALSQFHRFKKKVHFSTIFRF 499
           N P T K+  I + G V  C Y+AL+Q+H+     HF     F
Sbjct: 255 NMPMTTKDDVIGNMGRVV-CRYLALNQYHQTIYHFHFRAAINF 296


>Z50016-2|CAC42346.1|  487|Caenorhabditis elegans Hypothetical
           protein T21C12.1b protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = -2

Query: 726 QNCTISIASFLYMILSFQLLYAVRQFIAYKEAKNRPFTYKNHHI-NH*GSVSSC*YVALS 550
           Q+C + I S+ Y IL    +   ++ ++ +  +   F  ++  + NH   +SS  Y  L 
Sbjct: 179 QHCKLEIESYGYSILDIMYVSHEKKSVSTESYELPQFVLQSIKVVNHTQKLSSGEYSRLC 238

Query: 549 QFHRFKKKVHFSTI 508
            F  FK+ + F  I
Sbjct: 239 WFFLFKRNIGFYII 252


>AF151640-1|AAD42382.1|  487|Caenorhabditis elegans ionotropic GABA
           receptor subunitUNC-49A protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = -2

Query: 726 QNCTISIASFLYMILSFQLLYAVRQFIAYKEAKNRPFTYKNHHI-NH*GSVSSC*YVALS 550
           Q+C + I S+ Y IL    +   ++ ++ +  +   F  ++  + NH   +SS  Y  L 
Sbjct: 179 QHCKLEIESYGYSILDIMYVSHEKKSVSTESYELPQFVLQSIKVVNHTQKLSSGEYSRLC 238

Query: 549 QFHRFKKKVHFSTI 508
            F  FK+ + F  I
Sbjct: 239 WFFLFKRNIGFYII 252


>AF022975-3|AAB70674.1|  548|Caenorhabditis elegans Hypothetical
           protein K09C6.8 protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -2

Query: 627 NRPFTYKNHHINH*GSVSSC*YVALSQFHRFKKKVHFSTIFRF 499
           N P T K+  I + G V  C Y+AL+Q+H+     HF     F
Sbjct: 70  NFPMTPKDDVIGNMGMVV-CRYLALNQYHQTIYHFHFRAAINF 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,375,622
Number of Sequences: 27780
Number of extensions: 305985
Number of successful extensions: 726
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)