Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30010X
(566 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase su... 62 2e-10
D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase su... 62 2e-10
AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical... 62 2e-10
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr... 29 3.1
U00065-2|AAL27237.1| 672|Caenorhabditis elegans Prion-like-(q/n... 29 3.1
AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical ... 28 5.4
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical p... 27 9.4
Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical p... 27 9.4
Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical pr... 27 9.4
U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical pr... 27 9.4
AL021387-2|CAA16168.1| 463|Caenorhabditis elegans Hypothetical ... 27 9.4
AF273769-1|AAG15118.1| 463|Caenorhabditis elegans nuclear recep... 27 9.4
AF083222-1|AAD03680.1| 463|Caenorhabditis elegans nuclear recep... 27 9.4
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 27 9.4
>D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 62.5 bits (145), Expect = 2e-10
Identities = 28/31 (90%), Positives = 31/31 (100%)
Frame = +3
Query: 312 FGSLIIGYSRNPSLKQQLFSYAILGFALSEA 404
FG+L+IGY+RNPSLKQQLFSYAILGFALSEA
Sbjct: 46 FGALVIGYARNPSLKQQLFSYAILGFALSEA 76
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 193 AVRSFQTTSVTKDIDSAAKFM 255
A R TT KDIDSAAK++
Sbjct: 6 AARMISTTVARKDIDSAAKYI 26
>D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 62.5 bits (145), Expect = 2e-10
Identities = 28/31 (90%), Positives = 31/31 (100%)
Frame = +3
Query: 312 FGSLIIGYSRNPSLKQQLFSYAILGFALSEA 404
FG+L+IGY+RNPSLKQQLFSYAILGFALSEA
Sbjct: 46 FGALVIGYARNPSLKQQLFSYAILGFALSEA 76
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 193 AVRSFQTTSVTKDIDSAAKFM 255
A R TT KDIDSAAK++
Sbjct: 6 AARMISTTVARKDIDSAAKYI 26
>AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical
protein Y82E9BR.3 protein.
Length = 116
Score = 62.5 bits (145), Expect = 2e-10
Identities = 28/31 (90%), Positives = 31/31 (100%)
Frame = +3
Query: 312 FGSLIIGYSRNPSLKQQLFSYAILGFALSEA 404
FG+L+IGY+RNPSLKQQLFSYAILGFALSEA
Sbjct: 70 FGALVIGYARNPSLKQQLFSYAILGFALSEA 100
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 193 AVRSFQTTSVTKDIDSAAKFM 255
A R TT KDIDSAAK++
Sbjct: 30 AARMISTTVARKDIDSAAKYI 50
>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
protein E01G6.1 protein.
Length = 1391
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +3
Query: 120 CTGATTCSSTHPYTDGTCCPYTALCSAVLP 209
C+ C + D CCPY + C A P
Sbjct: 189 CSATKPCPNGFSCNDKKCCPYASACPAGAP 218
>U00065-2|AAL27237.1| 672|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 25
protein.
Length = 672
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +3
Query: 60 NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYT 185
N C P + C+ T C+S + +G CCP T
Sbjct: 106 NTQCGSNSSPQVSASGQVVTCSTNTQCASGYTCNNGACCPNT 147
>AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical
protein Y45F3A.8 protein.
Length = 404
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = -3
Query: 240 RVNVLSDRCGLEGPHCR---ELCRDSRYHLCMGGYCCKWSHQC 121
RV ++ C P CR +LC SRY M YC K C
Sbjct: 321 RVEEGTEDCEDMTPDCRNYRDLCEHSRYKTLMENYCPKACGHC 363
>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
protein W05B2.2 protein.
Length = 1278
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 111 LQLCTGATTCSSTHPYTDGTCCPYTA 188
+Q C+G C TH + CCP A
Sbjct: 373 VQRCSGKEHCPETHDCKNTVCCPKPA 398
>Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical
protein ZK1067.7 protein.
Length = 373
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 66 VCRQT-DRPCSQVCHLLQLCTGATT---CSSTHPYTDGTCC 176
+C+QT C Q ++ C +++ CSS + G+CC
Sbjct: 330 ICQQTCQNTCQQAAQIVVPCQSSSSGCGCSSGYSQCGGSCC 370
>Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical
protein D2085.5b protein.
Length = 1007
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 185 CVGTAGTICVWVGTAASG-RTSAELQK 108
CVG GT+C + +G +TS +LQK
Sbjct: 375 CVGVLGTVCDVIQLGVTGSKTSPDLQK 401
>Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical
protein D2085.5a protein.
Length = 1048
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 185 CVGTAGTICVWVGTAASG-RTSAELQK 108
CVG GT+C + +G +TS +LQK
Sbjct: 416 CVGVLGTVCDVIQLGVTGSKTSPDLQK 442
>Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical
protein D2085.5b protein.
Length = 1007
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 185 CVGTAGTICVWVGTAASG-RTSAELQK 108
CVG GT+C + +G +TS +LQK
Sbjct: 375 CVGVLGTVCDVIQLGVTGSKTSPDLQK 401
>Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical
protein D2085.5a protein.
Length = 1048
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 185 CVGTAGTICVWVGTAASG-RTSAELQK 108
CVG GT+C + +G +TS +LQK
Sbjct: 416 CVGVLGTVCDVIQLGVTGSKTSPDLQK 442
>U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical
protein D1044.7 protein.
Length = 400
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = +3
Query: 57 QNAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYT 185
QN C P + C + C+S + ++G CCP T
Sbjct: 72 QNTQCGTNSSPQVSASGQVVTCFTNSQCASGYICSNGACCPNT 114
>AL021387-2|CAA16168.1| 463|Caenorhabditis elegans Hypothetical
protein H01A20.1 protein.
Length = 463
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 147 YCCKWSHQCRVAEDGRPGCR 88
Y C++S +CR+ + GR CR
Sbjct: 87 YVCRYSKKCRIDKAGRNVCR 106
>AF273769-1|AAG15118.1| 463|Caenorhabditis elegans nuclear receptor
NHR-3 protein.
Length = 463
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 147 YCCKWSHQCRVAEDGRPGCR 88
Y C++S +CR+ + GR CR
Sbjct: 87 YVCRYSKKCRIDKAGRNVCR 106
>AF083222-1|AAD03680.1| 463|Caenorhabditis elegans nuclear receptor
NHR-3 protein.
Length = 463
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 147 YCCKWSHQCRVAEDGRPGCR 88
Y C++S +CR+ + GR CR
Sbjct: 87 YVCRYSKKCRIDKAGRNVCR 106
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1
Query: 310 SSAPSSSAIPGTPPSNSSCSHT 375
+S SSSA P PP SS SHT
Sbjct: 2040 ASTSSSSAPPPPPPLTSSSSHT 2061
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,858,090
Number of Sequences: 27780
Number of extensions: 257545
Number of successful extensions: 1194
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -