Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10456
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   123   2e-28
AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical ...    33   0.16 
AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical ...    31   0.64 
U53332-1|AAK31529.2|  580|Caenorhabditis elegans Hypothetical pr...    31   1.1  
DQ178637-1|ABD75716.1|  580|Caenorhabditis elegans F59G1.4 protein.    31   1.1  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    30   1.9  
Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z96048-5|CAB09422.1|  443|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z93390-6|CAB07675.4|  816|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z93390-1|CAE46674.1|  540|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z80214-7|CAC42261.2|  816|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF273808-1|AAG15157.1|  442|Caenorhabditis elegans nuclear recep...    28   7.8  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  123 bits (296), Expect = 2e-28
 Identities = 56/86 (65%), Positives = 66/86 (76%)
 Frame = +1

Query: 4   VQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAA 183
           VQDKNKYNTPKYRLIVR++NKDV  Q+AYS+IEGD +V +AYSHELPRYG+KVGLTNYAA
Sbjct: 38  VQDKNKYNTPKYRLIVRITNKDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAA 97

Query: 184 AYSTGXXXXXXXXXXXXXDTLYTGQQ 261
           AY+TG             D+ Y G +
Sbjct: 98  AYATGLLLARRHLKTIGLDSTYKGHE 123



 Score =  106 bits (255), Expect = 1e-23
 Identities = 49/84 (58%), Positives = 62/84 (73%), Gaps = 1/84 (1%)
 Frame = +3

Query: 261 DVTGDEYNVEPV-DNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPG 437
           ++TG++YNVE   D  P  F+  LD+GLARTTTG+++F  MKG  DGG+NVPHS  RF G
Sbjct: 124 ELTGEDYNVEEEGDRAP--FKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFG 181

Query: 438 YDAESKKFNAEVHRAHIFGLHVAD 509
           +D ESK++NAE HR  I G HVAD
Sbjct: 182 FDQESKEYNAEAHRDRILGKHVAD 205



 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 35/73 (47%), Positives = 47/73 (64%)
 Frame = +2

Query: 509 YMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQK 688
           YM  L+++DED +KRQFSK++  G+ AD + A Y+K H AIRAD S   K+  K S   K
Sbjct: 206 YMTYLKEEDEDRYKRQFSKFLAAGLNADNLVATYQKVHSAIRADASPAAKKAAKPS---K 262

Query: 689 RWNKRQLTLAERK 727
           R   ++LT  ERK
Sbjct: 263 RHTAKRLTYDERK 275


>AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical
           protein T04C4.1a protein.
          Length = 955

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 5/120 (4%)
 Frame = -3

Query: 412 GTLRPPSTA---PFIAPKTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSPVTSVVQCIR 242
           G    PST+   PF++P      ++ A  +S      P P+S    +  +PV + V+ +R
Sbjct: 42  GPSAAPSTSLSPPFLSPSYSMDYIIEAMTSSSSTSPVPPPVSASRPV--APVVARVEGLR 99

Query: 241 CQVQVFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQR--TQYGHLQSESRPPGMLH 68
             V V           L   Q  L  +  H N+ T +NK+R  T  G+   E+RPP   H
Sbjct: 100 A-VPVGHRRQHSSPGHLQQFQQELHARHHHANI-TRLNKKRRNTDTGY-DPEARPPKFKH 156


>AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical
           protein F41A4.1 protein.
          Length = 696

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 282 NVEPVDNGPGAFRCYL-DVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKK 458
           N EP++   G F C+L       TT+G+R  G      +  L    + ++FPG    +  
Sbjct: 68  NAEPIEKKNGGFNCHLHSKSPVLTTSGSRTVGTKTCLENKCLKRSFAFEKFPGRSLVNSS 127

Query: 459 F 461
           F
Sbjct: 128 F 128


>U53332-1|AAK31529.2|  580|Caenorhabditis elegans Hypothetical
           protein F59G1.4 protein.
          Length = 580

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +2

Query: 569 IKLGVTADAIEAIYKKAHEAI---RADPSHKKKELKKDSVKQKRWNKRQLTLAERK 727
           I +G++  A+E  YKKA + I   + D  +KKK+ K+   K+K    R + L  RK
Sbjct: 422 INIGLSDGAVE--YKKAQDEITRKKEDEENKKKKEKEKVEKEKMKALRHIQLTSRK 475


>DQ178637-1|ABD75716.1|  580|Caenorhabditis elegans F59G1.4 protein.
          Length = 580

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +2

Query: 569 IKLGVTADAIEAIYKKAHEAI---RADPSHKKKELKKDSVKQKRWNKRQLTLAERK 727
           I +G++  A+E  YKKA + I   + D  +KKK+ K+   K+K    R + L  RK
Sbjct: 422 INIGLSDGAVE--YKKAQDEITRKKEDEENKKKKEKEKVEKEKMKALRHIQLTSRK 475


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 127  KQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 14
            +QR     ++ + + P   HLC R+++  DI  CYI CS
Sbjct: 980  RQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 127  KQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 14
            +QR     ++ + + P   HLC R+++  DI  CYI CS
Sbjct: 980  RQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018


>Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical
           protein K10G4.5 protein.
          Length = 1251

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +1

Query: 22  YNTPKYRLIVRLSNKDVTCQVAYSRIEGDHI---VCAAYSHEL 141
           YN P+YR +++L  K   C+     + GD++   +CA +  EL
Sbjct: 548 YNDPEYRNVMKLKIKSPICE--QCEVTGDNLPFGICAEHETEL 588


>Z96048-5|CAB09422.1|  443|Caenorhabditis elegans Hypothetical
           protein F57A10.5 protein.
          Length = 443

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 304 PLSTGSTLYSSPVTSVVQCIRCQVQVFE 221
           P++   T YS+ V SV   IRCQ++  E
Sbjct: 318 PMTFNDTHYSASVMSVAPLIRCQIKNIE 345


>Z93390-6|CAB07675.4|  816|Caenorhabditis elegans Hypothetical
           protein T23B5.3a protein.
          Length = 816

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 169 SDQPSHHNVATHVNKQRTQYGHLQSESRP 83
           SD P HH   +H + Q  Q  HLQ    P
Sbjct: 17  SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45


>Z93390-1|CAE46674.1|  540|Caenorhabditis elegans Hypothetical
           protein T23B5.3b protein.
          Length = 540

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 169 SDQPSHHNVATHVNKQRTQYGHLQSESRP 83
           SD P HH   +H + Q  Q  HLQ    P
Sbjct: 17  SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45


>Z80214-7|CAC42261.2|  816|Caenorhabditis elegans Hypothetical
           protein T23B5.3a protein.
          Length = 816

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 169 SDQPSHHNVATHVNKQRTQYGHLQSESRP 83
           SD P HH   +H + Q  Q  HLQ    P
Sbjct: 17  SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45


>AF273808-1|AAG15157.1|  442|Caenorhabditis elegans nuclear receptor
           NHR-60 protein.
          Length = 442

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 304 PLSTGSTLYSSPVTSVVQCIRCQVQVFE 221
           P++   T YS+ V SV   IRCQ++  E
Sbjct: 317 PMTFSDTHYSASVMSVAPLIRCQIKNIE 344


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,513,351
Number of Sequences: 27780
Number of extensions: 385410
Number of successful extensions: 1172
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)