Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10447X
(436 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 68 3e-12
AF016679-4|AAB66158.1| 430|Caenorhabditis elegans Hypothetical ... 28 2.5
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 27 4.4
Z69662-9|CAA93507.2| 1782|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z69662-8|CAA93506.2| 1776|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z68214-8|CAA92449.2| 1782|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z68214-7|CAA92448.2| 1776|Caenorhabditis elegans Hypothetical pr... 27 7.8
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 27 7.8
AY396716-1|AAR29589.1| 1800|Caenorhabditis elegans DAF-15 protein. 27 7.8
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 27 7.8
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 27 7.8
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 27 7.8
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 27 7.8
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 27 7.8
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 68.1 bits (159), Expect = 3e-12
Identities = 31/60 (51%), Positives = 39/60 (65%)
Frame = +1
Query: 256 RLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLG 435
R RAGKGK+RNR+ Q+ GP++I+ +D RAFRNIPGV+ APGGHLG
Sbjct: 187 RNRAGKGKLRNRQHKQKLGPVVIYGQDAECARAFRNIPGVDVMNVERLNLLKLAPGGHLG 246
Score = 42.3 bits (95), Expect = 1e-04
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +3
Query: 3 APTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADK 167
AP K +RRWH QARGH+I+++ E+PLVV+DK
Sbjct: 102 APLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDK 156
Score = 42.3 bits (95), Expect = 1e-04
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +2
Query: 158 SGQVQEINKTKQAVIFLRRLKAWSDILKVYKSR 256
S +V+ KTK+AV+FLRR W+DI KVY S+
Sbjct: 154 SDKVESFRKTKEAVVFLRRSHLWADIEKVYNSK 186
>AF016679-4|AAB66158.1| 430|Caenorhabditis elegans Hypothetical
protein T28C12.3 protein.
Length = 430
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = -2
Query: 417 SQLQEVQLVNIQELHTG--DVAEGASQTLILVEDYEGSLTLDTTTVAHFTL 271
S L+ + ++ LH + E + + L++++ +E + TL TTVA+F+L
Sbjct: 281 SLLKHFEPETLESLHIEILEFDEDSVKELVILDQWEEAKTLSLTTVAYFSL 331
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 27.5 bits (58), Expect = 4.4
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1
Query: 367 GCCGRRESDPDPC*RL*GVPYAGYDDGC-AFYPYQHEDARLVHLKD 233
G G R+SD D R G+ +AG DD F P+ E+ R + +++
Sbjct: 1477 GVNGDRDSDEDLVQRKIGIFHAGDDDSYNCFNPHTRENIRKISVEE 1522
>Z69662-9|CAA93507.2| 1782|Caenorhabditis elegans Hypothetical
protein C10C5.6b protein.
Length = 1782
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 31 TVASTS---DSGERPWRQRLLLPASQRSFRLEDTLLKRFPSFP 150
T+A TS DS ++ +RQ LLL RSF L ++ +F P
Sbjct: 356 TIAFTSIDRDSFQKLFRQDLLLATLFRSFLLAQRVMSKFNVLP 398
>Z69662-8|CAA93506.2| 1776|Caenorhabditis elegans Hypothetical
protein C10C5.6a protein.
Length = 1776
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 31 TVASTS---DSGERPWRQRLLLPASQRSFRLEDTLLKRFPSFP 150
T+A TS DS ++ +RQ LLL RSF L ++ +F P
Sbjct: 356 TIAFTSIDRDSFQKLFRQDLLLATLFRSFLLAQRVMSKFNVLP 398
>Z68214-8|CAA92449.2| 1782|Caenorhabditis elegans Hypothetical
protein C10C5.6b protein.
Length = 1782
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 31 TVASTS---DSGERPWRQRLLLPASQRSFRLEDTLLKRFPSFP 150
T+A TS DS ++ +RQ LLL RSF L ++ +F P
Sbjct: 356 TIAFTSIDRDSFQKLFRQDLLLATLFRSFLLAQRVMSKFNVLP 398
>Z68214-7|CAA92448.2| 1776|Caenorhabditis elegans Hypothetical
protein C10C5.6a protein.
Length = 1776
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 31 TVASTS---DSGERPWRQRLLLPASQRSFRLEDTLLKRFPSFP 150
T+A TS DS ++ +RQ LLL RSF L ++ +F P
Sbjct: 356 TIAFTSIDRDSFQKLFRQDLLLATLFRSFLLAQRVMSKFNVLP 398
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = -2
Query: 276 TLTSTKTRDLYTLRISD 226
T+T+ KT D+YTL+IS+
Sbjct: 2120 TITTIKTEDVYTLKISN 2136
>AY396716-1|AAR29589.1| 1800|Caenorhabditis elegans DAF-15 protein.
Length = 1800
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 31 TVASTS---DSGERPWRQRLLLPASQRSFRLEDTLLKRFPSFP 150
T+A TS DS ++ +RQ LLL RSF L ++ +F P
Sbjct: 380 TIAFTSIDRDSFQKLFRQDLLLATLFRSFLLAQRVMSKFNVLP 422
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = -2
Query: 276 TLTSTKTRDLYTLRISD 226
T+T+ KT D+YTL+IS+
Sbjct: 1480 TITTIKTEDVYTLKISN 1496
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = -2
Query: 276 TLTSTKTRDLYTLRISD 226
T+T+ KT D+YTL+IS+
Sbjct: 2120 TITTIKTEDVYTLKISN 2136
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = -2
Query: 276 TLTSTKTRDLYTLRISD 226
T+T+ KT D+YTL+IS+
Sbjct: 2120 TITTIKTEDVYTLKISN 2136
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = -2
Query: 276 TLTSTKTRDLYTLRISD 226
T+T+ KT D+YTL+IS+
Sbjct: 1480 TITTIKTEDVYTLKISN 1496
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = -2
Query: 276 TLTSTKTRDLYTLRISD 226
T+T+ KT D+YTL+IS+
Sbjct: 2120 TITTIKTEDVYTLKISN 2136
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,257,475
Number of Sequences: 27780
Number of extensions: 176646
Number of successful extensions: 558
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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