Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10445
(486 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024830-3|AAF59604.3| 180|Caenorhabditis elegans Hypothetical ... 32 0.19
L15188-10|AAA27953.1| 110|Caenorhabditis elegans Heat shock pro... 30 1.0
Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical pr... 28 4.1
U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone... 28 4.1
AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear recep... 28 4.1
AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear recep... 28 4.1
AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear recep... 28 4.1
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 27 9.5
U29612-8|AAW57827.1| 108|Caenorhabditis elegans Heat shock prot... 27 9.5
U29612-7|AAO61437.1| 205|Caenorhabditis elegans Heat shock prot... 27 9.5
U29612-6|AAA68804.1| 219|Caenorhabditis elegans Heat shock prot... 27 9.5
AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical ... 27 9.5
AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical ... 27 9.5
>AC024830-3|AAF59604.3| 180|Caenorhabditis elegans Hypothetical
protein Y55F3BR.6 protein.
Length = 180
Score = 32.3 bits (70), Expect = 0.19
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +3
Query: 9 KEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERV-VPI 185
KED + S F + LP + V ++LT+DG+L + A E K + + + +
Sbjct: 113 KEDTYGTIESTFKRRFPLPKAVAPESVQSQLTADGHLTIDAKAPE--PKQEGARPIQIKV 170
Query: 186 VETGAPYKK 212
+ T A +K
Sbjct: 171 INTSAEQQK 179
>L15188-10|AAA27953.1| 110|Caenorhabditis elegans Heat shock
protein protein 12.2 protein.
Length = 110
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 3 EAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTA 131
E + D+H A + Y LP + + V + L + G L +TA
Sbjct: 64 ETRSDNHGTVAREINRAYKLPDDVDVSTVKSHLATRGVLTITA 106
>Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical
protein C48D5.1 protein.
Length = 619
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 131 ADQRKC**NEKYRARCTYCRDWRSVQEG 214
A + C +++YR+RC YCR + ++ G
Sbjct: 305 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 332
>U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone
receptor familymember CNR8 protein.
Length = 463
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 131 ADQRKC**NEKYRARCTYCRDWRSVQEG 214
A + C +++YR+RC YCR + ++ G
Sbjct: 149 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 176
>AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 131 ADQRKC**NEKYRARCTYCRDWRSVQEG 214
A + C +++YR+RC YCR + ++ G
Sbjct: 305 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 332
>AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 469
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 131 ADQRKC**NEKYRARCTYCRDWRSVQEG 214
A + C +++YR+RC YCR + ++ G
Sbjct: 155 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 182
>AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 131 ADQRKC**NEKYRARCTYCRDWRSVQEG 214
A + C +++YR+RC YCR + ++ G
Sbjct: 305 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 332
>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical protein
F26H11.2c protein.
Length = 2266
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 96 ELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVEKTTVETLDV 254
E + GY PI ++ + +T+R P V P D P +K + LDV
Sbjct: 1734 ENKTSGYDSSGNPI-RSITSSGDTQRAPPYVSNLLPSSNDSPDDKVIKQVLDV 1785
>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical
protein C06B8.7 protein.
Length = 3118
Score = 26.6 bits (56), Expect = 9.5
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +2
Query: 158 EKYRARCTYCRDWRSVQEGRTCR 226
+++R+ CT +W S+ G CR
Sbjct: 146 DRWRSVCTMVTNWTSIDTGTACR 168
>U29612-8|AAW57827.1| 108|Caenorhabditis elegans Heat shock protein
protein 25,isoform c protein.
Length = 108
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 3 EAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISE 143
E K VF ++ + LP ++ +++ L++DG L V AP+ +
Sbjct: 58 EEKTPQRTVFR-EYNQEFLLPRGTNPEQISSTLSTDGVLTVEAPLPQ 103
>U29612-7|AAO61437.1| 205|Caenorhabditis elegans Heat shock protein
protein 25,isoform b protein.
Length = 205
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 3 EAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISE 143
E K VF ++ + LP ++ +++ L++DG L V AP+ +
Sbjct: 155 EEKTPQRTVFR-EYNQEFLLPRGTNPEQISSTLSTDGVLTVEAPLPQ 200
>U29612-6|AAA68804.1| 219|Caenorhabditis elegans Heat shock protein
protein 25,isoform a protein.
Length = 219
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 3 EAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISE 143
E K VF ++ + LP ++ +++ L++DG L V AP+ +
Sbjct: 169 EEKTPQRTVFR-EYNQEFLLPRGTNPEQISSTLSTDGVLTVEAPLPQ 214
>AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical
protein Y25C1A.8b protein.
Length = 219
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 280 SSSGSDCSTGTRGEERTDHALRTR*SDRKRQRDPTRKRS 396
S SG +CS +E+ + + R+R R+ RKRS
Sbjct: 108 SCSGGECSCPESEDEKEKDRRKMHKTSRERDRESHRKRS 146
>AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical
protein Y25C1A.8a protein.
Length = 345
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 280 SSSGSDCSTGTRGEERTDHALRTR*SDRKRQRDPTRKRS 396
S SG +CS +E+ + + R+R R+ RKRS
Sbjct: 234 SCSGGECSCPESEDEKEKDRRKMHKTSRERDRESHRKRS 272
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,777,745
Number of Sequences: 27780
Number of extensions: 144526
Number of successful extensions: 607
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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