Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10434X
         (308 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    30   0.38 
AL117205-5|CAB55163.1|  456|Caenorhabditis elegans Hypothetical ...    29   0.87 
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr...    28   1.2  
AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical ...    28   1.2  
AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transport...    27   2.0  
Z95559-2|CAB09000.3|  520|Caenorhabditis elegans Hypothetical pr...    27   2.7  
Z82259-1|CAB05126.3|  437|Caenorhabditis elegans Hypothetical pr...    27   2.7  
AY305849-1|AAR11993.1|  437|Caenorhabditis elegans nuclear recep...    27   2.7  
AY204184-1|AAO39188.1|  353|Caenorhabditis elegans nuclear recep...    27   2.7  
AF040645-7|AAB94977.2|  304|Caenorhabditis elegans Hypothetical ...    27   2.7  
U80450-4|AAB37829.1|  926|Caenorhabditis elegans Hypothetical pr...    26   4.7  
U61948-4|AAB03146.1|  316|Caenorhabditis elegans Hypothetical pr...    26   4.7  
AL034393-6|CAA22321.1|  507|Caenorhabditis elegans Hypothetical ...    26   4.7  
Z35640-1|CAA84705.1|  307|Caenorhabditis elegans Hypothetical pr...    26   6.2  
AF016658-4|AAB66043.1|  242|Caenorhabditis elegans Hypothetical ...    26   6.2  
Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical pr...    25   8.1  
Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical pr...    25   8.1  
Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical pr...    25   8.1  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +1

Query: 85  SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVA 210
           ++ +LPK+  +L   + EG     L+ V+T EK VLP+ EDVA
Sbjct: 3   AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVA 42



 Score = 29.9 bits (64), Expect = 0.38
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 127 QLEGFNTSCLRDVDTNEKIVLPSAEDV 207
           ++E F+++ L      EKIVLPSA+D+
Sbjct: 53  EIEHFDSTKLHSTPVKEKIVLPSADDI 79



 Score = 29.9 bits (64), Expect = 0.38
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 82  PSLKDLP--KVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATGRT 222
           PS  D+   K   +L  ++  F +  L+  +T EK VLPS  DVA  +T
Sbjct: 74  PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122


>AL117205-5|CAB55163.1|  456|Caenorhabditis elegans Hypothetical
           protein Y116A8A.6 protein.
          Length = 456

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 152 VSVTSTPMKRLCFRLLKTSQLGGPRVLN 235
           +S+T+   +R+C    KT + GGP +LN
Sbjct: 216 LSITAVKDERICTDTYKTEKAGGPLILN 243


>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
           protein F07A11.4 protein.
          Length = 1095

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 128 SSKASTPAVSVTSTPMKRLCFRLLKTSQLGGPRVLNRRYREVYSS 262
           S+ + TP +S +S P  RL F    ++    PR     ++ +YSS
Sbjct: 58  STTSDTPKLSSSSAPRSRLSFTTPSSTSTNLPRTSITSHKTLYSS 102


>AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.3a protein.
          Length = 923

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +2

Query: 20  FYPLPHQKYIDSEWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFR-- 193
           F P+P    + +   +     P   TSP+SP +   S++   P VSVTS P ++      
Sbjct: 19  FSPIPKFSRLRTPRTSREYVCPLKSTSPQSPSS---STENEPPPVSVTSPPARKRALEES 75

Query: 194 -LLKTSQLGGPRVLNR 238
            +    Q  GP VL R
Sbjct: 76  TVTPIQQKIGPPVLKR 91


>AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transporter
            family protein 4 protein.
          Length = 1802

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 259  RINFSIPSIKDSWSSQLRRLQQTEAQSFHW 170
            ++NF IP   DSWS    +L +T + S +W
Sbjct: 1710 QLNFDIPRDGDSWSRLFEKL-ETVSTSLNW 1738


>Z95559-2|CAB09000.3|  520|Caenorhabditis elegans Hypothetical
           protein Y41E3.3 protein.
          Length = 520

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = -2

Query: 211 LRRLQQTEAQSFHW----CRRHGDSWC*SLRADSSGLWRPWG 98
           L + QQ+++ S  W    C+ HG  W   ++ D+ G+W  WG
Sbjct: 91  LHKSQQSDS-SLEWLTDDCQLHGFHWRAGVKRDTVGIWL-WG 130


>Z82259-1|CAB05126.3|  437|Caenorhabditis elegans Hypothetical
           protein C28D4.1 protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 232 KDSWSSQLRRLQQTEAQSFHWCR 164
           K +W+S  R L   EA  F+WCR
Sbjct: 190 KINWNSHSRPLITIEALRFNWCR 212


>AY305849-1|AAR11993.1|  437|Caenorhabditis elegans nuclear receptor
           NHR-100 protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 232 KDSWSSQLRRLQQTEAQSFHWCR 164
           K +W+S  R L   EA  F+WCR
Sbjct: 190 KINWNSHSRPLITIEALRFNWCR 212


>AY204184-1|AAO39188.1|  353|Caenorhabditis elegans nuclear receptor
           NHR-100 protein.
          Length = 353

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 232 KDSWSSQLRRLQQTEAQSFHWCR 164
           K +W+S  R L   EA  F+WCR
Sbjct: 106 KINWNSHSRPLITIEALRFNWCR 128


>AF040645-7|AAB94977.2|  304|Caenorhabditis elegans Hypothetical
           protein F52C6.11 protein.
          Length = 304

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +1

Query: 73  SDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDV 207
           S   S K+  KVA   K QLE    SCL  ++T E+I    A D+
Sbjct: 243 SSEKSTKEKLKVAK--KYQLENLKASCLAKINTLEEIKAALAGDL 285


>U80450-4|AAB37829.1|  926|Caenorhabditis elegans Hypothetical
           protein M01E11.3 protein.
          Length = 926

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = +1

Query: 118 LKSQL-EGFNTSCLRDVDT--NEKIVLPSAEDVATGRTK 225
           LK +L +G NT    ++D   +EKI+LP A+ + TG+ K
Sbjct: 154 LKIELTDGVNTLKAIELDEVFDEKIMLPGAKIILTGKVK 192


>U61948-4|AAB03146.1|  316|Caenorhabditis elegans Hypothetical
           protein C46A5.6 protein.
          Length = 316

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 70  VSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEK 180
           ++++P  +D P   +        FNT+   D+D NE+
Sbjct: 158 ITESPKNRDFPLFFSSFDDTTVLFNTTIAGDIDVNER 194


>AL034393-6|CAA22321.1|  507|Caenorhabditis elegans Hypothetical
           protein Y18D10A.8 protein.
          Length = 507

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 62  PAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMK 178
           PAP V +PP  TSP +    +V+S  ++P  S    PM+
Sbjct: 133 PAPTVGIPPSATSPPT----QVTSSVTSPVPSSPQPPMQ 167


>Z35640-1|CAA84705.1|  307|Caenorhabditis elegans Hypothetical
           protein F43D9.2 protein.
          Length = 307

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 110 ATLGRSFREGVSLTEQAILNQYIFDEEGDRRFVHS 6
           AT+G  FRE   + E  +L   ++D  G  R+  S
Sbjct: 131 ATIGVDFRERSCVIENELLRVQLWDTAGQERYRQS 165


>AF016658-4|AAB66043.1|  242|Caenorhabditis elegans Hypothetical
           protein B0047.3 protein.
          Length = 242

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 85  SLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 210
           S++DL K+A     QLE   T CL  ++T ++I    A + A
Sbjct: 174 SMRDLLKLAKQF--QLENLKTVCLSKINTLDEIEASMAHNPA 213


>Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical
           protein ZK337.1c protein.
          Length = 1516

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 115 LWRPWGGLSGRECHS 71
           +WRPW G+ G +  S
Sbjct: 674 IWRPWWGIGGSDAQS 688


>Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical
           protein ZK337.1b protein.
          Length = 1501

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 115 LWRPWGGLSGRECHS 71
           +WRPW G+ G +  S
Sbjct: 674 IWRPWWGIGGSDAQS 688


>Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical
           protein ZK337.1a protein.
          Length = 1508

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 115 LWRPWGGLSGRECHS 71
           +WRPW G+ G +  S
Sbjct: 674 IWRPWWGIGGSDAQS 688


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,330,807
Number of Sequences: 27780
Number of extensions: 142815
Number of successful extensions: 497
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)