Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10429
         (423 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022974-9|AAC48035.3|  566|Caenorhabditis elegans Hypothetical ...    29   1.8  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AC024824-2|AAK85502.1|  740|Caenorhabditis elegans Hypothetical ...    26   9.7  

>AF022974-9|AAC48035.3|  566|Caenorhabditis elegans Hypothetical
           protein F26G5.1 protein.
          Length = 566

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 341 YKACYISH*VQSGVVCYISTDCKRASPS 258
           YK CY++  VQ+GV   ++T   R++P+
Sbjct: 11  YKICYMAQSVQAGVPLGLATSAHRSAPN 38


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -2

Query: 338 KACYISH*VQSGVVCYI-STDCKRASPSPVRIGRH 237
           K CY  H V+  + C+I S  C      P++ G H
Sbjct: 672 KMCYGGHRVRKNIPCHIDSVSCGVVCKKPLKCGVH 706


>AC024824-2|AAK85502.1|  740|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.2 protein.
          Length = 740

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 145 RAATRTVTSAPPSVRSTHTTVHIHV 71
           R+ T +V S PPS  STH+ V   V
Sbjct: 343 RSTTPSVPSRPPSALSTHSHVETEV 367


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,626,640
Number of Sequences: 27780
Number of extensions: 182011
Number of successful extensions: 340
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)