Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10426
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23486-5|AAL38958.2|  326|Caenorhabditis elegans Serpentine rece...    29   4.9  
Z35602-2|CAA84671.3|  824|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>U23486-5|AAL38958.2|  326|Caenorhabditis elegans Serpentine
           receptor, class x protein114 protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +3

Query: 315 KSIVN--ICRGGARYPIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVIA 488
           KS+ N  IC G   +P+ P+        PSFYNV+ G+ +      A  + P +   +  
Sbjct: 51  KSMANNIICMGFIAWPV-PVTYLNFYFLPSFYNVLAGQII---GWFAWTYSPTTQILLAG 106

Query: 489 KRPAPIAFPTVAH 527
            R   + FP   H
Sbjct: 107 NRLMAVYFPKAYH 119


>Z35602-2|CAA84671.3|  824|Caenorhabditis elegans Hypothetical
           protein R13G10.2 protein.
          Length = 824

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 76  IDIYNVNAPLTLRYKF*GLKYNYNG--CPTLQTETHYCFTAE 195
           I + N+N P+TL  +  G+KY  +   CP +  E   CFT E
Sbjct: 406 IIVGNINNPITLLCEQIGIKYRNSNFFCPLID-ENGRCFTLE 446


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,250,765
Number of Sequences: 27780
Number of extensions: 421192
Number of successful extensions: 844
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)