Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10390
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   130   1e-30
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    33   0.21 
U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    28   6.0  
AC006761-8|AAF60552.2|  524|Caenorhabditis elegans Hypothetical ...    28   6.0  
AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  130 bits (313), Expect = 1e-30
 Identities = 61/98 (62%), Positives = 75/98 (76%)
 Frame = +2

Query: 221 GKKHYDAQSHQNHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGA 400
           GK     ++ + HL  NP+LEKLLPHI  NVGFVFT+ DL E+R KLLEN+  APA+ GA
Sbjct: 56  GKNTMIRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGA 115

Query: 401 IAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTLK 514
           IAP  V +P  NTG+GPEKTSFFQAL IPTKI++GT++
Sbjct: 116 IAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIE 153



 Score =  113 bits (273), Expect = 9e-26
 Identities = 50/83 (60%), Positives = 68/83 (81%)
 Frame = +1

Query: 484 PYQNFKGYFEIINDVHILKPGDKVGASEANLLNMLNISPFSYGLVVKQVYDSGTIFAPEI 663
           P +  +G  EI+NDVH++K GDKVGASE+ LLNML ++PFSYGLVV+QVYD GT++ PE+
Sbjct: 144 PTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDDGTLYTPEV 203

Query: 664 LDIKPEDLRAKFQAGVANVAALS 732
           LD+  E+LR +F +GV NVA++S
Sbjct: 204 LDMTTEELRKRFLSGVRNVASVS 226



 Score =  102 bits (244), Expect = 3e-22
 Identities = 41/66 (62%), Positives = 58/66 (87%)
 Frame = +3

Query: 57  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 236
           M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGKNTM
Sbjct: 1   MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60

Query: 237 MRKAIK 254
           +RKA++
Sbjct: 61  IRKALR 66


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +2

Query: 278 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIP-AHNTGLGPE 454
           L K    +KG  G +FT     EV  +  E   +  AR G +A  +VV+P    +     
Sbjct: 90  LHKASAILKGQCGLMFTNMSKKEVEAEFSEASEEDYARVGDVATETVVLPEGPISQFAFS 149

Query: 455 KTSFFQALSIPTKISKGTL 511
                + L +PTK+ KG +
Sbjct: 150 MEPQLRKLGLPTKLDKGVI 168



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/74 (25%), Positives = 37/74 (50%)
 Frame = +3

Query: 30  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 209
           R    +L+++ ++ K T K+N   ++   +D+Y   FI    N+ S +   IR   + +S
Sbjct: 6   RDKNVSLTKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENS 64

Query: 210 IVLMGKNTMMRKAI 251
               GKN ++  A+
Sbjct: 65  RFFFGKNNVISIAL 78


>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +3

Query: 12  LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 125
           L+ K   S ++ +SR+ +EDK +  SN+++K  QLL E
Sbjct: 156 LLWKLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
           protein Y46B2A.3 protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 420 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 310
           TT      P  AG WT+ +N ++R  TR P    +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227


>AC006761-8|AAF60552.2|  524|Caenorhabditis elegans Hypothetical
           protein Y41G9A.6 protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +3

Query: 309 TLASCSPAETSLRSVTNCWRTKSRLQL-VPVPL-PHCQSSFPPTTPASVQRKPLSSKLFP 482
           T+ S  P      ++     T+S + L + VP  P   + FPP TP   +  P ++ L  
Sbjct: 451 TVVSSEPNHIDFSAINQLSHTQSPVNLQIRVPQQPLGAAGFPPVTPGLFENNPQNTDLAD 510

Query: 483 SLPKFQRV 506
            L  F ++
Sbjct: 511 LLQNFLKL 518


>AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical
           protein Y67D8B.2 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 359 LLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 508
           +L   +Q  A   A+  L+  +P   TGL P +   FQAL  P  I+  T
Sbjct: 42  VLNRYMQLEAYCDAVDDLTGALP--KTGLAPNEPDLFQALFFPRSIAPRT 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,458,963
Number of Sequences: 27780
Number of extensions: 416779
Number of successful extensions: 1433
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1426
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)