Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30180
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC091125-8|AAP46267.1|  353|Caenorhabditis elegans Hypothetical ...    73   2e-13
AC091125-7|AAK27890.1|  510|Caenorhabditis elegans Hypothetical ...    73   2e-13
Z99281-33|CAJ44242.1|  459|Caenorhabditis elegans Hypothetical p...    67   1e-11
Z99281-32|CAB16511.1|  444|Caenorhabditis elegans Hypothetical p...    67   1e-11
U00002-1|AAA17051.1|  444|Caenorhabditis elegans rabGDI protein.       67   1e-11
AL022270-2|CAB63433.2|  952|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z36948-2|CAA85410.1|  268|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>AC091125-8|AAP46267.1|  353|Caenorhabditis elegans Hypothetical
           protein Y67D2.1b protein.
          Length = 353

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 28/47 (59%), Positives = 36/47 (76%)
 Frame = +3

Query: 258 SLGRYGNTPFLWPMYGSGELPQCFCRLCAVFGGVYCLNRPIDKVETK 398
           S+G +G +PFL+P+YG GEL QCFCRL AVFG +YCL RP+  +  K
Sbjct: 270 SVGHFGPSPFLFPLYGCGELSQCFCRLAAVFGSLYCLGRPVQAIVKK 316



 Score = 31.1 bits (67), Expect = 0.62
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +1

Query: 7   VFATEAVGIVEKRMLMKMLTSIVGYS---EEEMNNEFKDWNNKTLKEYLTHKGLTPNLIH 177
           +F + A+ I+EKR LMK +T    +S    EE      +  ++   E+L   G+   L  
Sbjct: 183 IFQSNALSILEKRALMKFITFCTQWSTKDTEEGRKLLAEHADRPFSEFLEQMGVGKTLQS 242

Query: 178 YILYAI 195
           +I+  I
Sbjct: 243 FIINTI 248


>AC091125-7|AAK27890.1|  510|Caenorhabditis elegans Hypothetical
           protein Y67D2.1a protein.
          Length = 510

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 28/47 (59%), Positives = 36/47 (76%)
 Frame = +3

Query: 258 SLGRYGNTPFLWPMYGSGELPQCFCRLCAVFGGVYCLNRPIDKVETK 398
           S+G +G +PFL+P+YG GEL QCFCRL AVFG +YCL RP+  +  K
Sbjct: 270 SVGHFGPSPFLFPLYGCGELSQCFCRLAAVFGSLYCLGRPVQAIVKK 316



 Score = 31.1 bits (67), Expect = 0.62
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +1

Query: 7   VFATEAVGIVEKRMLMKMLTSIVGYS---EEEMNNEFKDWNNKTLKEYLTHKGLTPNLIH 177
           +F + A+ I+EKR LMK +T    +S    EE      +  ++   E+L   G+   L  
Sbjct: 183 IFQSNALSILEKRALMKFITFCTQWSTKDTEEGRKLLAEHADRPFSEFLEQMGVGKTLQS 242

Query: 178 YILYAI 195
           +I+  I
Sbjct: 243 FIINTI 248


>Z99281-33|CAJ44242.1|  459|Caenorhabditis elegans Hypothetical
           protein Y57G11C.10b protein.
          Length = 459

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 25/44 (56%), Positives = 36/44 (81%)
 Frame = +3

Query: 258 SLGRYGNTPFLWPMYGSGELPQCFCRLCAVFGGVYCLNRPIDKV 389
           SL RYG +P+L+P+YG GELPQ F RL A++GG Y L++P+D++
Sbjct: 216 SLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLDKPVDEI 259


>Z99281-32|CAB16511.1|  444|Caenorhabditis elegans Hypothetical
           protein Y57G11C.10a protein.
          Length = 444

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 25/44 (56%), Positives = 36/44 (81%)
 Frame = +3

Query: 258 SLGRYGNTPFLWPMYGSGELPQCFCRLCAVFGGVYCLNRPIDKV 389
           SL RYG +P+L+P+YG GELPQ F RL A++GG Y L++P+D++
Sbjct: 216 SLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLDKPVDEI 259


>U00002-1|AAA17051.1|  444|Caenorhabditis elegans rabGDI protein.
          Length = 444

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 25/44 (56%), Positives = 36/44 (81%)
 Frame = +3

Query: 258 SLGRYGNTPFLWPMYGSGELPQCFCRLCAVFGGVYCLNRPIDKV 389
           SL RYG +P+L+P+YG GELPQ F RL A++GG Y L++P+D++
Sbjct: 216 SLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLDKPVDEI 259


>AL022270-2|CAB63433.2|  952|Caenorhabditis elegans Hypothetical
           protein C26G2.2 protein.
          Length = 952

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -1

Query: 228 FEAGQAVVPASDSVQYVVNEVRGQALVSQVFLQCLV---VPVFKLIVHLLFAITDNRCQH 58
           F+A  + V AS + QY   ++    L+    L+ LV     VFK+I+HL   +T NR   
Sbjct: 34  FDAYDSFVNASFNSQYFHIDIAQCELLFGNSLESLVGFFSRVFKIIIHLQLYMTTNRTSD 93

Query: 57  FHEH 46
            H +
Sbjct: 94  GHSY 97


>Z36948-2|CAA85410.1|  268|Caenorhabditis elegans Hypothetical
           protein D2089.3 protein.
          Length = 268

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
 Frame = +1

Query: 265 EDMATLHSCGPCMEAENCRNASAGSVQFSAA-STA*IGPSIKSKRKP-----LMKEKPSV 426
           E  A+   CG C++ E   N+  GS        T  I   ++ +RKP     L  + P +
Sbjct: 71  ESCASCVCCGECVDEEFVCNSPPGSTDLCVIYETVSIHTDLEKQRKPASSNSLPSDFPDI 130

Query: 427 FQNPPQ 444
             N PQ
Sbjct: 131 SMNEPQ 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,432,831
Number of Sequences: 27780
Number of extensions: 314869
Number of successful extensions: 1075
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)