Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30142
(606 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 182 2e-46
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 182 2e-46
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 100 2e-21
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 100 2e-21
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 64 7e-11
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 47 9e-06
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.21
AF078788-7|AAC26958.1| 227|Caenorhabditis elegans Hypothetical ... 30 1.5
AF068713-7|AAC17798.2| 359|Caenorhabditis elegans Hypothetical ... 30 1.5
AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical ... 29 3.4
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical protein
F25H5.4 protein.
Length = 852
Score = 182 bits (442), Expect = 2e-46
Identities = 84/105 (80%), Positives = 89/105 (84%), Gaps = 3/105 (2%)
Frame = +2
Query: 2 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 181
EPVYL EIQCPE AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADLR
Sbjct: 736 EPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADLR 795
Query: 182 SNTGGQAFPQCVFDHWQVLPGDPCDLRASPTTLY---RKRERGKD 307
SNTGGQAFPQCVFDHWQVLPGDP + P + RKR+ K+
Sbjct: 796 SNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKE 840
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +1
Query: 238 PWRPVRPQSKPYNVVQETRKRKGLKEGLP 324
P P+ +KP +V +TRKRKGLKEG+P
Sbjct: 815 PGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 182 bits (442), Expect = 2e-46
Identities = 84/105 (80%), Positives = 89/105 (84%), Gaps = 3/105 (2%)
Frame = +2
Query: 2 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 181
EPVYL EIQCPE AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADLR
Sbjct: 736 EPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADLR 795
Query: 182 SNTGGQAFPQCVFDHWQVLPGDPCDLRASPTTLY---RKRERGKD 307
SNTGGQAFPQCVFDHWQVLPGDP + P + RKR+ K+
Sbjct: 796 SNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKE 840
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +1
Query: 238 PWRPVRPQSKPYNVVQETRKRKGLKEGLP 324
P P+ +KP +V +TRKRKGLKEG+P
Sbjct: 815 PGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 99.5 bits (237), Expect = 2e-21
Identities = 42/85 (49%), Positives = 56/85 (65%)
Frame = +2
Query: 2 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 181
EP Y E+ P V +Y VL +RRGHV ++ + G+PM+ + AY+PV +SFGF DLR
Sbjct: 833 EPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLR 892
Query: 182 SNTGGQAFPQCVFDHWQVLPGDPCD 256
+T GQAF F HWQ++PGDP D
Sbjct: 893 IHTQGQAFCMSAFHHWQLVPGDPLD 917
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 99.5 bits (237), Expect = 2e-21
Identities = 42/85 (49%), Positives = 56/85 (65%)
Frame = +2
Query: 2 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 181
EP Y E+ P V +Y VL +RRGHV ++ + G+PM+ + AY+PV +SFGF DLR
Sbjct: 708 EPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLR 767
Query: 182 SNTGGQAFPQCVFDHWQVLPGDPCD 256
+T GQAF F HWQ++PGDP D
Sbjct: 768 IHTQGQAFCMSAFHHWQLVPGDPLD 792
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical protein
K10C3.5a protein.
Length = 894
Score = 64.1 bits (149), Expect = 7e-11
Identities = 36/98 (36%), Positives = 50/98 (51%)
Frame = +2
Query: 8 VYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSN 187
+Y C + A+G ++ VL++R+ V E T +F V + +PV ESF F LR
Sbjct: 758 MYRCTVTTASQALGKVHAVLSQRKSKVLSEDINEATNLFEVVSLMPVVESFSFCDQLRKF 817
Query: 188 TGGQAFPQCVFDHWQVLPGDPCDLRASPTTLYRKRERG 301
T G A Q F HWQV+ DP +P+TL E G
Sbjct: 818 TSGMASAQLQFSHWQVIDEDP---YWTPSTLEEIEEFG 852
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 47.2 bits (107), Expect = 9e-06
Identities = 29/72 (40%), Positives = 35/72 (48%)
Frame = +2
Query: 86 VFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCDLRA 265
V E T +F V + +PV ESF F LR T G A Q F HWQV+ DP
Sbjct: 595 VLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP---YW 651
Query: 266 SPTTLYRKRERG 301
+P+TL E G
Sbjct: 652 TPSTLEEIEEFG 663
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 32.7 bits (71), Expect = 0.21
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +2
Query: 2 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 181
EP+ E P G + L +R + G I +A P+++ FG+T++LR
Sbjct: 644 EPIMKVEATVPTEFQGNVVTSLTQRNALITTTDSTEGYATVICEA--PLSDMFGYTSELR 701
Query: 182 SNTGGQ 199
S T G+
Sbjct: 702 SLTEGK 707
>AF078788-7|AAC26958.1| 227|Caenorhabditis elegans Hypothetical
protein ZC190.8 protein.
Length = 227
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 186 TPADRPSRSAYSTIGRSSLETRATSEQALQRCTGNEKEERIEGRSPR 326
T P+ S YST R S + S++ +++ NEK E E ++ +
Sbjct: 168 TELGSPTNSQYSTTTRKSSKKSTRSDRKMEKTQRNEKSEHTEEQTDK 214
>AF068713-7|AAC17798.2| 359|Caenorhabditis elegans Hypothetical
protein T24A6.11 protein.
Length = 359
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -2
Query: 473 LLSHLRVCFNMMRNMCC*K*TCVKRFPYRYVFLICFNYVV 354
+L+ LR+C+ C + TC K FP ++V L+ ++VV
Sbjct: 290 ILTPLRICYTSCLFQHC-QITCQKNFPTKFVDLLSLSHVV 328
>AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical
protein F02E11.1 protein.
Length = 567
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 241 REDLPMVEYALREGLSAGVGTQIGSKTERLID 146
+ED+ +EY + E ++ +GTQ+ KT +D
Sbjct: 232 QEDVTRIEYLIHEYQNSDIGTQMLKKTRTAVD 263
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,480,477
Number of Sequences: 27780
Number of extensions: 288367
Number of successful extensions: 696
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -