Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30139
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024790-3|AAF60637.1| 446|Caenorhabditis elegans Hypothetical ... 45 6e-05
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 34 0.11
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 34 0.11
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z96102-6|CAJ85756.1| 1062|Caenorhabditis elegans Hypothetical pr... 32 0.45
Z96102-5|CAB54262.2| 1096|Caenorhabditis elegans Hypothetical pr... 32 0.45
Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical pr... 32 0.45
Z81027-7|CAJ85745.1| 1062|Caenorhabditis elegans Hypothetical pr... 32 0.45
Z81027-6|CAB54178.2| 1096|Caenorhabditis elegans Hypothetical pr... 32 0.45
Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical pr... 32 0.45
U40858-1|AAA83272.1| 1096|Caenorhabditis elegans serine/threonin... 32 0.45
U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonin... 32 0.45
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 32 0.45
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 31 0.79
AF025460-2|AAF02169.3| 545|Caenorhabditis elegans Prion-like-(q... 31 1.0
AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear recep... 30 1.8
AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear horm... 30 1.8
AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear horm... 30 1.8
Z78015-2|CAB01431.1| 97|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z81143-1|CAB03513.1| 381|Caenorhabditis elegans Hypothetical pr... 29 3.2
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g... 29 3.2
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ... 29 3.2
U55376-1|AAA98003.1| 434|Caenorhabditis elegans Hypothetical pr... 29 4.2
U29377-10|AAA68717.1| 140|Caenorhabditis elegans Hypothetical p... 28 5.6
U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defecti... 28 5.6
U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defecti... 28 5.6
U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defecti... 28 5.6
AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity... 28 5.6
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 28 5.6
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 28 5.6
AC024790-10|AAF60632.2| 129|Caenorhabditis elegans Hypothetical... 28 5.6
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr... 28 7.4
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr... 28 7.4
AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical ... 28 7.4
Z70206-4|CAA94125.1| 235|Caenorhabditis elegans Hypothetical pr... 27 9.8
>AC024790-3|AAF60637.1| 446|Caenorhabditis elegans Hypothetical
protein Y47D7A.6 protein.
Length = 446
Score = 44.8 bits (101), Expect = 6e-05
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 9/130 (6%)
Frame = +3
Query: 63 PPTSWPGG----IVSEYRAP*SNHPPRDAHSLHCPAYCSRGTGCP*NPCCSSYPHHPRSS 230
PP S+P + Y+ P +++ + A+S P Y + P + P +P S
Sbjct: 232 PPPSYPTAKKYPVAPTYQMPPNDYAQKPAYSTAPPTYPTEAPTYPTTASYETTPSYPEPS 291
Query: 231 YLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTY----HAAPAAHS-ATTYHTAPAIHA 395
Y + S I APTY P+ P+Y HAA + A TY T P+ +
Sbjct: 292 Y--------QVSKKYPI--APTYETTPSYETTPSYLVQSHAASKKYPIAPTYETTPSSYD 341
Query: 396 TSAIHQVPAY 425
T+ + VP+Y
Sbjct: 342 TTPSYSVPSY 351
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 33.9 bits (74), Expect = 0.11
Identities = 38/123 (30%), Positives = 51/123 (41%), Gaps = 12/123 (9%)
Frame = +3
Query: 54 PRRPPTSWPGGIVSEYRAP*SN--HPPRDAHSLHCPAYCSRGTGCP*NP--CCSSYPHHP 221
PR PTS S +P S P +S P+Y S G P +P SS + P
Sbjct: 1673 PRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSP 1732
Query: 222 RS-SYLPCSPS------SHEASSYQAIHSAPTYH-VAPAGHEAPTYHAAPAAHSATTYHT 377
S SY P SP + SS S+PTY+ +P G +P Y +S T+
Sbjct: 1733 TSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSY 1792
Query: 378 APA 386
P+
Sbjct: 1793 TPS 1795
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 33.9 bits (74), Expect = 0.11
Identities = 38/123 (30%), Positives = 51/123 (41%), Gaps = 12/123 (9%)
Frame = +3
Query: 54 PRRPPTSWPGGIVSEYRAP*SN--HPPRDAHSLHCPAYCSRGTGCP*NP--CCSSYPHHP 221
PR PTS S +P S P +S P+Y S G P +P SS + P
Sbjct: 1680 PRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSP 1739
Query: 222 RS-SYLPCSPS------SHEASSYQAIHSAPTYH-VAPAGHEAPTYHAAPAAHSATTYHT 377
S SY P SP + SS S+PTY+ +P G +P Y +S T+
Sbjct: 1740 TSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSY 1799
Query: 378 APA 386
P+
Sbjct: 1800 TPS 1802
>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical protein
K04H4.2c protein.
Length = 1446
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +3
Query: 159 YCSRGTGCP*NPCCSSYPHHPRSSYLPCSPSSHEA 263
YC+ G C N CC SY PR S C PS A
Sbjct: 903 YCATGYSCIQNQCCPSYNSAPRISVYTC-PSGGNA 936
>Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical
protein K04H4.2b protein.
Length = 788
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +3
Query: 159 YCSRGTGCP*NPCCSSYPHHPRSSYLPCSPSSHEA 263
YC+ G C N CC SY PR S C PS A
Sbjct: 245 YCATGYSCIQNQCCPSYNSAPRISVYTC-PSGGNA 278
>Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical
protein K04H4.2a protein.
Length = 628
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +3
Query: 159 YCSRGTGCP*NPCCSSYPHHPRSSYLPCSPSSHEA 263
YC+ G C N CC SY PR S C PS A
Sbjct: 245 YCATGYSCIQNQCCPSYNSAPRISVYTC-PSGGNA 278
>Z96102-6|CAJ85756.1| 1062|Caenorhabditis elegans Hypothetical
protein H39E23.1c protein.
Length = 1062
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +3
Query: 174 TGCP*NPCCSSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPT 332
+G P + SS +HP++ S S++ +Q H+A ++ V P+ ++ PT
Sbjct: 773 SGAPSSTGASSQQYHPKAPSSSSSSSTNPPHQHQLTHNA-SFSVTPSSYQIPT 824
>Z96102-5|CAB54262.2| 1096|Caenorhabditis elegans Hypothetical
protein H39E23.1b protein.
Length = 1096
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +3
Query: 174 TGCP*NPCCSSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPT 332
+G P + SS +HP++ S S++ +Q H+A ++ V P+ ++ PT
Sbjct: 807 SGAPSSTGASSQQYHPKAPSSSSSSSTNPPHQHQLTHNA-SFSVTPSSYQIPT 858
>Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical protein
H39E23.1a protein.
Length = 1192
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +3
Query: 174 TGCP*NPCCSSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPT 332
+G P + SS +HP++ S S++ +Q H+A ++ V P+ ++ PT
Sbjct: 903 SGAPSSTGASSQQYHPKAPSSSSSSSTNPPHQHQLTHNA-SFSVTPSSYQIPT 954
>Z81027-7|CAJ85745.1| 1062|Caenorhabditis elegans Hypothetical
protein H39E23.1c protein.
Length = 1062
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +3
Query: 174 TGCP*NPCCSSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPT 332
+G P + SS +HP++ S S++ +Q H+A ++ V P+ ++ PT
Sbjct: 773 SGAPSSTGASSQQYHPKAPSSSSSSSTNPPHQHQLTHNA-SFSVTPSSYQIPT 824
>Z81027-6|CAB54178.2| 1096|Caenorhabditis elegans Hypothetical
protein H39E23.1b protein.
Length = 1096
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +3
Query: 174 TGCP*NPCCSSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPT 332
+G P + SS +HP++ S S++ +Q H+A ++ V P+ ++ PT
Sbjct: 807 SGAPSSTGASSQQYHPKAPSSSSSSSTNPPHQHQLTHNA-SFSVTPSSYQIPT 858
>Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical protein
H39E23.1a protein.
Length = 1192
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +3
Query: 174 TGCP*NPCCSSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPT 332
+G P + SS +HP++ S S++ +Q H+A ++ V P+ ++ PT
Sbjct: 903 SGAPSSTGASSQQYHPKAPSSSSSSSTNPPHQHQLTHNA-SFSVTPSSYQIPT 954
>U40858-1|AAA83272.1| 1096|Caenorhabditis elegans serine/threonine
kinase protein.
Length = 1096
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +3
Query: 174 TGCP*NPCCSSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPT 332
+G P + SS +HP++ S S++ +Q H+A ++ V P+ ++ PT
Sbjct: 807 SGAPSSTGASSQQYHPKAPSSSSSSSTNPPHQHQLTHNA-SFSVTPSSYQIPT 858
>U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonine
kinase protein.
Length = 1192
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +3
Query: 174 TGCP*NPCCSSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPT 332
+G P + SS +HP++ S S++ +Q H+A ++ V P+ ++ PT
Sbjct: 903 SGAPSSTGASSQQYHPKAPSSSSSSSTNPPHQHQLTHNA-SFSVTPSSYQIPT 954
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 31.9 bits (69), Expect = 0.45
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +3
Query: 213 HHPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSAT-TYHTAPAI 389
HH + P HE+ + H +P +H GH +HA PA H +H APA
Sbjct: 428 HHGEHHHAPAHHGHHESHGHG--HHSPAHH----GHHGEHHHA-PAHHGHHGEHHHAPAH 480
Query: 390 HATSAIH 410
H H
Sbjct: 481 HGHHGEH 487
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 31.1 bits (67), Expect = 0.79
Identities = 31/121 (25%), Positives = 45/121 (37%), Gaps = 3/121 (2%)
Frame = +3
Query: 45 GRKPRRPPTSWPGGIVSEYRAP*SNHPPRDAHSLHCPAYCSRGTGCP*NPCCSSYPHHPR 224
GR PP ++P G VS R PP + P Y T P + P +
Sbjct: 223 GRPGSTPPATFPPGSVSTVRYTPGPTPPA-PWTYTVPPYSGYRTIPPVYNHYETVPPAAQ 281
Query: 225 SS-YLPCSPSSHEASSYQAIHSA--PTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHA 395
++ PC+P + ++ +A P + AP A PA + TY T I
Sbjct: 282 TTPQPPCTPRTTTTTTTTTTTTALPPCVYTPAPPATAPPATATPATQTPRTYSTTTPIKT 341
Query: 396 T 398
T
Sbjct: 342 T 342
>AF025460-2|AAF02169.3| 545|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 41
protein.
Length = 545
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +3
Query: 201 SSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATT 368
SS PHH +S+ P +P S++ A + + A + T AAPA ATT
Sbjct: 70 SSPPHHQKSA-APSAPPRDVTSAHAPPPPASSAPIVGAPRQGATPQAAPATTPATT 124
>AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear receptor
NHR-8 protein.
Length = 560
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
Frame = +3
Query: 228 SYLPCSPSSHEASSY---QAIHSAPT-YHVAPA 314
S + C+PSSH++S Y Q + +PT Y V+PA
Sbjct: 218 SVISCAPSSHDSSGYNTSQLVTQSPTNYTVSPA 250
>AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform b protein.
Length = 559
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
Frame = +3
Query: 228 SYLPCSPSSHEASSY---QAIHSAPT-YHVAPA 314
S + C+PSSH++S Y Q + +PT Y V+PA
Sbjct: 217 SVISCAPSSHDSSGYNTSQLVTQSPTNYTVSPA 249
>AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform a protein.
Length = 560
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
Frame = +3
Query: 228 SYLPCSPSSHEASSY---QAIHSAPT-YHVAPA 314
S + C+PSSH++S Y Q + +PT Y V+PA
Sbjct: 218 SVISCAPSSHDSSGYNTSQLVTQSPTNYTVSPA 250
>Z78015-2|CAB01431.1| 97|Caenorhabditis elegans Hypothetical
protein R02D5.4 protein.
Length = 97
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 270 YQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHT--APAIHATSA 404
+Q H PTY + + P Y PA ++TT+++ P AT+A
Sbjct: 8 HQHRHQPPTYEDSIKSYSPPKYDMTPATTNSTTHNSMELPTSSATTA 54
>Z81143-1|CAB03513.1| 381|Caenorhabditis elegans Hypothetical
protein ZK265.2 protein.
Length = 381
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +3
Query: 225 SSYLPCSPSSHEASSYQAIHSAPTYHVAPA-----GHEAPTYHAAPAAHSATTYHTAP 383
++Y PC P S E ++ + S P + APA G+++P AAP + A TAP
Sbjct: 280 AAYCPCPPRSAEMAATGSSDSQPASYEAPAPAATKGYDSPA-PAAPKGYDAPA-PTAP 335
>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of glp-1
protein.
Length = 1492
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 184 GQPVPREQY-AGQCSEWASRGGWFDHGARYSETIPPGHDVGGLRGLRPQQR 35
G P P+ + A +++ ++G + GARY PG + G G PQ +
Sbjct: 1146 GAPTPQGPFGAAPGAQFGAQGPYGQQGARYEAQKSPGAAIFGAPGAPPQHQ 1196
>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
protein Y53H1C.2a protein.
Length = 1512
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 184 GQPVPREQY-AGQCSEWASRGGWFDHGARYSETIPPGHDVGGLRGLRPQQR 35
G P P+ + A +++ ++G + GARY PG + G G PQ +
Sbjct: 1166 GAPTPQGPFGAAPGAQFGAQGPYGQQGARYEAQKSPGAAIFGAPGAPPQHQ 1216
>U55376-1|AAA98003.1| 434|Caenorhabditis elegans Hypothetical
protein F16H11.3 protein.
Length = 434
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 219 DGVDSWSSMDFRGSLCHGSSMQGSVVN 139
DGV++W S +F GSL S + + +N
Sbjct: 59 DGVETWYSKEFMGSLTIASQLPNASIN 85
>U29377-10|AAA68717.1| 140|Caenorhabditis elegans Hypothetical
protein K05F1.10 protein.
Length = 140
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +1
Query: 19 KIVLICAVVAVSHAGLLHH 75
+++L+CA++AV+ A L HH
Sbjct: 2 RLLLLCALIAVASASLFHH 20
>U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defective
protein 1, isoformc protein.
Length = 721
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/68 (19%), Positives = 30/68 (44%)
Frame = +3
Query: 216 HPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHA 395
H S +P + ++ YQ S P+ V+ P A+ ++++AP +
Sbjct: 31 HSHSIGVPSASTTSHDHQYQRFASEPSDSVSRTARVPPPRLASATVRRTESFNSAPGVST 90
Query: 396 TSAIHQVP 419
++ ++ +P
Sbjct: 91 SAPMYTLP 98
>U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defective
protein 1, isoformb protein.
Length = 942
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/68 (19%), Positives = 30/68 (44%)
Frame = +3
Query: 216 HPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHA 395
H S +P + ++ YQ S P+ V+ P A+ ++++AP +
Sbjct: 229 HSHSIGVPSASTTSHDHQYQRFASEPSDSVSRTARVPPPRLASATVRRTESFNSAPGVST 288
Query: 396 TSAIHQVP 419
++ ++ +P
Sbjct: 289 SAPMYTLP 296
>U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defective
protein 1, isoforma protein.
Length = 987
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/68 (19%), Positives = 30/68 (44%)
Frame = +3
Query: 216 HPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHA 395
H S +P + ++ YQ S P+ V+ P A+ ++++AP +
Sbjct: 297 HSHSIGVPSASTTSHDHQYQRFASEPSDSVSRTARVPPPRLASATVRRTESFNSAPGVST 356
Query: 396 TSAIHQVP 419
++ ++ +P
Sbjct: 357 SAPMYTLP 364
>AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity
specification proteinSYD-1 protein.
Length = 942
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/68 (19%), Positives = 30/68 (44%)
Frame = +3
Query: 216 HPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHA 395
H S +P + ++ YQ S P+ V+ P A+ ++++AP +
Sbjct: 229 HSHSIGVPSASTTSHDHQYQRFASEPSDSVSRTARVPPPRLASATVRRTESFNSAPGVST 288
Query: 396 TSAIHQVP 419
++ ++ +P
Sbjct: 289 SAPMYTLP 296
>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
protein H11E01.3 protein.
Length = 1464
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +3
Query: 132 DAHSLHCPAYCSRGTGCP*NPCCSSYPHHPRSSYLPCSPSSHEAS 266
+ HS H + P SS+ HH RSS + P++ S
Sbjct: 637 EVHSFHASEHIDEALPSPVQSVHSSHDHHDRSSPVASEPAARSPS 681
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 28.3 bits (60), Expect = 5.6
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +3
Query: 219 PRSSYLPCSPSSHEASSY----QAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPA 386
P ++Y PC P + A +Y A +AP AP AAPAA +A APA
Sbjct: 293 PDAAYCPCPPRTLGAGAYPEGGDAAAAAPAGGYDGGAGAAP--EAAPAAAAAPQPAPAPA 350
Query: 387 IHATSA 404
A A
Sbjct: 351 AAAAPA 356
>AC024790-10|AAF60632.2| 129|Caenorhabditis elegans Hypothetical
protein Y47D7A.11 protein.
Length = 129
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +3
Query: 201 SSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHA----APAAHSATT 368
+SYP P SY P P S+ + APTY PA + P+Y A AP+ +S+++
Sbjct: 24 NSYPTTP--SY-PTPPPSYPTPKKYPV--APTYPSPPAYAQKPSYSAPPPPAPSVYSSSS 78
Query: 369 Y 371
+
Sbjct: 79 F 79
>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical
protein B0496.3a protein.
Length = 1551
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +3
Query: 192 PCCSSYPH--HPRSSYLPCSPSSHEASSYQ 275
P CS Y + HP S PCSP+ E ++
Sbjct: 47 PTCSKYIYGTHPMSGAEPCSPTKKEKHRFE 76
>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical
protein B0496.3b protein.
Length = 1592
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +3
Query: 192 PCCSSYPH--HPRSSYLPCSPSSHEASSYQ 275
P CS Y + HP S PCSP+ E ++
Sbjct: 47 PTCSKYIYGTHPMSGAEPCSPTKKEKHRFE 76
>AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical
protein Y38C9A.1 protein.
Length = 1484
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 219 PRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHA 341
P SS S S +A S + +AP VAPA APT+++
Sbjct: 1071 PSSSIPNTSTSIPKAPSAPVLSAAPPKIVAPAAPAAPTHYS 1111
>Z70206-4|CAA94125.1| 235|Caenorhabditis elegans Hypothetical
protein F46G10.6 protein.
Length = 235
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 555 RLKNPPHRATHKSQQRGPVNGDVVQGVNNSLLANLMGSFPQGSPN 689
+L P +A +Q P D + +NN + L+GSF SP+
Sbjct: 162 QLSQYPQQANIIAQSTNPAQLDGLIALNNDAILALLGSFQSVSPS 206
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,526,829
Number of Sequences: 27780
Number of extensions: 377854
Number of successful extensions: 1228
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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