Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30129
         (782 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024806-2|AAK84613.1|  433|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z35595-8|CAA84640.1|  540|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z93396-6|CAB07715.1|  109|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>AC024806-2|AAK84613.1|  433|Caenorhabditis elegans Hypothetical
           protein Y52E8A.4 protein.
          Length = 433

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 238 SNKWSMVASAVSMFCLQSRQLSPDAVAVML 149
           S KW+MV   V+ FC+Q+  + P+   +M+
Sbjct: 78  SGKWAMVLGMVAAFCMQAAYMFPNRYILMV 107


>Z35595-8|CAA84640.1|  540|Caenorhabditis elegans Hypothetical
           protein C01G6.7 protein.
          Length = 540

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +2

Query: 278 KMKATSPNGQIPEEWGPKDLSWSKYLASVGKPVNNRDHVIIENFIKPSGKVGNFC---TC 448
           K+K   PN  I + +G  +L+++ +L S G P  +   ++    +K   + G  C     
Sbjct: 321 KLKQLLPNVNIVQGYGMTELTFATHLQSPGSPDGSVGRLVPGTSMKVKKEDGTLCGPHEI 380

Query: 449 CDMTLKGPRQV 481
            ++ +KGP+ +
Sbjct: 381 GELWIKGPQMM 391


>Z93396-6|CAB07715.1|  109|Caenorhabditis elegans Hypothetical
           protein ZC15.8 protein.
          Length = 109

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 325 TKGLELVQVFGQRGQTG*QPRPRY-HRELY*TFRESRQF 438
           T+G    Q +GQ  Q G    PRY  + +Y T +  RQF
Sbjct: 41  TRGYNQQQQYGQTNQFGQTTTPRYTSQSMYGTTQSGRQF 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,321,944
Number of Sequences: 27780
Number of extensions: 402551
Number of successful extensions: 1266
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)