Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30126
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55376-5|AAA98007.1|  501|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z54342-16|CAA91156.1|  755|Caenorhabditis elegans Hypothetical p...    29   4.7  
Z47072-4|CAA87370.1|  755|Caenorhabditis elegans Hypothetical pr...    29   4.7  

>U55376-5|AAA98007.1|  501|Caenorhabditis elegans Hypothetical
           protein F16H11.1 protein.
          Length = 501

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 446 PRYEKNAKNILQNSTFSIVAGLLMSAVLPFVLPALKMMTVAVGI 577
           P   K +K IL +  F + +G+L  AV+   LP  K+  +AVGI
Sbjct: 338 PVVSKLSKKILYS--FGLASGMLSCAVMMLDLPGWKIYALAVGI 379


>U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical
           protein F48C1.1 protein.
          Length = 1064

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 602 AQLMPYYSKSRQQRSSFLMLARQMAVP 522
           AQL P++ KS+ ++ SFL+L +   +P
Sbjct: 623 AQLEPFFQKSKVEKDSFLLLFQATVLP 649


>Z54342-16|CAA91156.1|  755|Caenorhabditis elegans Hypothetical
           protein F26C11.1 protein.
          Length = 755

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +3

Query: 234 QFDRGYTGFSWKAYKNWSDDELYSQLCDDTKQLLQYRTMLFNVPGYKFELGSKGN 398
           +F+R YT  +WK  +NW +D +Y QL    + L       +  P  +F  G+ GN
Sbjct: 525 KFNR-YTD-AWKCQRNWFNDTMYQQLPWYNEDLYNEAQRTY-APFKRFTEGNFGN 576


>Z47072-4|CAA87370.1|  755|Caenorhabditis elegans Hypothetical
           protein F26C11.1 protein.
          Length = 755

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +3

Query: 234 QFDRGYTGFSWKAYKNWSDDELYSQLCDDTKQLLQYRTMLFNVPGYKFELGSKGN 398
           +F+R YT  +WK  +NW +D +Y QL    + L       +  P  +F  G+ GN
Sbjct: 525 KFNR-YTD-AWKCQRNWFNDTMYQQLPWYNEDLYNEAQRTY-APFKRFTEGNFGN 576


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,861,114
Number of Sequences: 27780
Number of extensions: 404923
Number of successful extensions: 1078
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)