Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30125
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...    96   2e-20
AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    31   0.87 
Z73908-4|CAA98127.2|  447|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      29   3.5  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    29   3.5  
Z35600-2|CAA84663.1|  394|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AL021487-2|CAA16353.1|  413|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z83238-7|CAB05797.1|  313|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 52/108 (48%), Positives = 64/108 (59%)
 Frame = +1

Query: 385 RKVLQLFRLRQINNGVFVRLNKATVNMLSIAEPYIAWGYPN*RVSVS*YTNVDSPS*VDN 564
           RK LQ+ RLRQINNGVFV+LNKAT+ +L I EPY+AWGYPN +                N
Sbjct: 102 RKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGN 161

Query: 565 VYQSLSNSIVEKRLHKHHIICVEDSSMRSSLVGRKVPVTRVNFLWPFK 708
                 N+IVE+ L K +IIC+ED +   + VG        NFLWPFK
Sbjct: 162 RVPITDNTIVEQSLGKFNIICLEDLAHEIATVGPHFK-EATNFLWPFK 208



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 25/49 (51%), Positives = 36/49 (73%)
 Frame = +2

Query: 245 QGIRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVK 391
           Q  R  +++ +RL R+A  +G++YVP E K+AFV+RIRGINQ+ PK  K
Sbjct: 55  QEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRK 103



 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 24/61 (39%), Positives = 33/61 (54%)
 Frame = +3

Query: 93  SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYASRNVM 272
           +KK+P VPE+VLK             Q  +   +   +KK + FKRAE+YV+EY  RN  
Sbjct: 4   TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEY--RNAQ 61

Query: 273 K 275
           K
Sbjct: 62  K 62


>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 501 VSPSNVRLGDT*HIHSSLIQTYKHTIVYLAQSKQLQNFTDFGE 373
           ++PS  RL    H H+ L Q +++ I    Q K++Q F   GE
Sbjct: 496 LAPSGTRLSTVRHTHTLLFQIWQYKINSFCQIKKIQFFVVCGE 538


>Z73908-4|CAA98127.2|  447|Caenorhabditis elegans Hypothetical
           protein F53B2.5 protein.
          Length = 447

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -3

Query: 719 DCSNLK---GHRKLTRVTGTFLPTSEDLMDESSTQIMWCLWSLFS 594
           DCS+ K      KL ++    L TS  L D    Q++WC+ ++FS
Sbjct: 113 DCSSCKLKCRSPKLLKILARNLQTSYKLDDADRRQLIWCVNNIFS 157


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
            C05C12.3 protein.
          Length = 1694

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 313  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 447
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 313  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 447
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1681

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 313  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 447
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1333 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1377


>Z35600-2|CAA84663.1|  394|Caenorhabditis elegans Hypothetical
           protein F37A8.2 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 616 GVYGASSQQCCWK 578
           G YG SSQQC WK
Sbjct: 192 GTYGCSSQQCYWK 204


>AL021487-2|CAA16353.1|  413|Caenorhabditis elegans Hypothetical
           protein Y45F10B.2 protein.
          Length = 413

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 616 GVYGASSQQCCWK 578
           G YG SSQQC WK
Sbjct: 211 GTYGCSSQQCYWK 223


>Z83238-7|CAB05797.1|  313|Caenorhabditis elegans Hypothetical
           protein T08G3.8 protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = -1

Query: 253 YSLTYCSALLKISLFFLMAEERLFSVTCNLLVRRASLLLRCLSTDSGTAGSFLLSSFPLT 74
           YS+     L+K+S +FL  + + +S   + ++ R  ++++ ++        FL+   PLT
Sbjct: 24  YSMPTVYILIKLSYYFLYRKNKCYSTDLHPVLFRQFMIMQ-IACFFNVCIKFLIFRIPLT 82

Query: 73  G 71
           G
Sbjct: 83  G 83


>U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical
           protein W06A11.4 protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +3

Query: 204 KKKREIFKRAEQYVKEYASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 383
           KK+R++ ++  +  ++ ASR  +K     K    A +T P +PN +  S S  S ++  +
Sbjct: 21  KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRYASN 80

Query: 384 P*SSATV*TAP 416
             S   + + P
Sbjct: 81  RSSQVKIRSVP 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,747,326
Number of Sequences: 27780
Number of extensions: 350004
Number of successful extensions: 890
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)